UFO02704.5prime Sequence
1057 bp (947 high quality bases) assembled on 2009-01-14
> UFO02704.5prime
CAGTCGACATGGTGTCCAGAGAAATGGCCCGGCGGAACTGCCCCAAGAGT
CCAAAGCATCTGAGAGTCAAGTTCCATCAGATGCGGCGTCAGTATGCGAG
AGCTCGGAATGGCGGCGAACCATTCGAGCACTTTGAGGCGGTGCACGAGT
TGATGCAGGGAGAAGATGTATCTGATCTGGATGAAGAGGCGCTAGAGAGT
GACAGCGATATGGAGGCCGACGAGGACCAGTCCGGCATGATCTCAGAAAC
CGAAGGGGACGATGCTTTGGATGCCTCAGGATCTTCAGTTAACATCGTCG
CCCGCTGCAAGTGGGCAGAGGGCGAAGTGGACCTCCTCCTAGACCTGATC
CACACACTTGGACTGCGAGCAGCTTTGCTGCAAAAGCGCAATGCCAAGGT
CTTCAAGCTGCTGTCCAAGGAGATGGCAAAACGCAACTGCCACAAGGGTG
CTGAGAAGCTGCGCATCAAGTTCCAGCAGCTGCGGCGATTGTACAACAAG
GTCAAGAACGGCACGGGGAAAACGTTCGAGCATTTTGAGGCGATGCGACT
GGTCCTGGATCCCACCGAAGAGGAGGCGGCCGCAGATGCTGAAGCGGAAG
CCCATCTGAGCAGCGCAAGCGATAGTGATTTCAATGACAGTGACGAGGAA
GAGGGTGATGCATCACAGAGAAGCGGAGCGCACTTTTGGACAGACGAAGA
GGTTGATTCGTTTCTACTCATCATTCGGGACAATGGTTTCTTTCGCGCCT
TGGATGGCTCAAGGAAGCGCAACTTCCAGACCCTGGTGCACATTTCCAAC
ATCCTGGCTAAGCAGGACATCAACGCACGCCACACCAGCTGCGCAATAAA
CTAAGCTGCTCTGCAAGCGTCATCGAGAGGCCAAGGAGCACGGGCTAGAT
ATGTACGCATTCTGCCTCGCCACTTTGAGCTTTCGATGACTGATCAGGCT
GCGGGAGAAACAAAGAAGTGCATCAGCAGCTCATCGCATCAGCAGCTTCT
TTTCTCAGCCGCAGCAACAGCGTCCGTGAGGACGCAACATTCAGTCCCTG
CATCTCT
UFO02704.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10494-RA | 1794 | CG10494-RA | 358..1375 | 9..1012 | 4660 | 98.1 | Plus |
| CG10494-RB | 2160 | CG10494-RB | 343..1360 | 9..1012 | 4660 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21517981..21518398 | 678..261 | 2090 | 100 | Minus |
| 2R | 25286936 | 2R | 21518457..21518709 | 261..9 | 1265 | 100 | Minus |
| 2R | 25286936 | 2R | 21517664..21517923 | 933..677 | 1150 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:20:54 has no hits.
UFO02704.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:29 Download gff for
UFO02704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 335..1287 | 4..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:26 Download gff for
UFO02704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RB | 339..1291 | 4..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:02 Download gff for
UFO02704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RB | 339..1291 | 4..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:02 Download gff for
UFO02704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21517664..21517921 | 679..933 | 98 | <- | Minus |
| 2R | 21517981..21518397 | 262..678 | 100 | <- | Minus |
| 2R | 21518457..21518713 | 4..261 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:26 Download gff for
UFO02704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17405169..17405426 | 679..933 | 98 | <- | Minus |
| arm_2R | 17405486..17405902 | 262..678 | 100 | <- | Minus |
| arm_2R | 17405962..17406218 | 4..261 | 99 | | Minus |
