UFO02706.5prime Sequence
1035 bp (920 high quality bases) assembled on 2009-01-14
> UFO02706.5prime
CAGTCGACATGTTTTCGATTAACGCCGTGATCCTGGGCATTTTGGTTACT
TCCGTTATGGCCCAGGATGCAAGGGGAACGTGTGAACTGAGCATCGGTTC
TCCGGCTCCGGTTGTTATTAGCAATTTTGGCTCCCAGCGTTTATTGTTCG
ATTCCGTGCGAAAATTAGAACGGGAAAATTACCAGACCATTGACCTTTTC
TGCGCGAGCGGATTTTCCATAGACTATTACAACTATTACAACAACCAGAT
CTCGACTACAATCAAAGCGACTAAACTTACAATGACCTGCGACCCTATTC
ATCGGTTTACCTATAAAGATGGCATAAAAGATGTAATTAGTGTTCGGTGT
CTGGAGGTCGGCCCTCAGTTGTTTGAGAGCATGAACAAATTGCCAAATTG
CACGGGCATGACTCTAGTTGTCGGAAGAAAATTCGATGGCATTGGTTTAA
TAAAATATTCAGCATTGTGCTATGATTTGGCCGCATTTCAATTGAAATAT
ATTGGTTATACCACAAATTTCAATAATATCCAGATTTTCCCAGAGACCCA
ATTGGGACAACTTAACGATATCGGACTTGATACTCCTATCAGTTACCAAA
AAAATCTATTCGAGACCATCAGCAAGAGTGAACTTGATGCGTACTTGGCA
AAGGAGAAGCAGTTGTTCACGGAGGACACTTTTCAGGTTGGCAGTTTGGT
CCAGGATGAGATGGTTAGTAGACACTTGGTTGTCTACGAGGACTTGCTGA
CCACCGTCTGGTTGGAGGTTCTGCGTTCCGGCAACTGGAAGCATTGGACG
AAGCAATGCGTGATGCCATCGGTGTCCACTTCGACATTCGTTTGGGTGTT
TCCAGGAACCGTGAAGCTGCGACGTTCGCAGGCATCATGCAACGGAAGCC
GATCGCTCAACATGACTGATGTGCAATCTGCCAATCCGCCCACATTGGGC
CATGTCACGCTGTGAAGTCGGTACGAACGATGATCGTCATCATGACCACT
CGCCTCATCCAATGACTAAGCAACCGACCTCGAGT
UFO02706.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2233-RA | 1480 | CG2233-RA | 33..1004 | 9..964 | 4415 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8036900..8037212 | 545..233 | 1565 | 100 | Minus |
| X | 23542271 | X | 8036341..8036637 | 913..620 | 1245 | 97.7 | Minus |
| X | 23542271 | X | 8037262..8037485 | 232..9 | 1120 | 100 | Minus |
| X | 23542271 | X | 8036726..8036804 | 622..544 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:24:58 has no hits.
UFO02706.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:29 Download gff for
UFO02706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2233-RA | 9..934 | 1..923 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:24 Download gff for
UFO02706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2233-RA | 26..951 | 1..923 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:46 Download gff for
UFO02706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2233-RA | 26..951 | 1..923 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:46 Download gff for
UFO02706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8036341..8036634 | 623..913 | 97 | <- | Minus |
| X | 8036726..8036802 | 546..622 | 100 | <- | Minus |
| X | 8036900..8037212 | 233..545 | 100 | <- | Minus |
| X | 8037262..8037492 | 1..232 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:24 Download gff for
UFO02706.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7930374..7930667 | 623..913 | 97 | <- | Minus |
| arm_X | 7930759..7930835 | 546..622 | 100 | <- | Minus |
| arm_X | 7930933..7931245 | 233..545 | 100 | <- | Minus |
| arm_X | 7931295..7931525 | 1..232 | 98 | | Minus |
