UFO02709.5prime Sequence
956 bp (742 high quality bases) assembled on 2009-01-14
> UFO02709.5prime
CAGTCGACATGGCTGGACGCGCTATCATCGCACTTTTGGCCCTACTGGGA
TTTGCCGGCTTGGCTTCCGTTGACGCACGCAAGGGCTATGGACCCGGTGA
TCAGGATTGGGGATTTGTGGATGTCAGGACTGGCGCCCACATGTTCTACT
GGCTGTACTACACCACCGCCAATGTCTCCAGTTACACGGAGCGTCCGCTG
GCCATTTGGCTCCAAGGAGGTCCAGGTGCCTCCTCAACGGGATACGGAAA
CTTTGAGGAGTTGGGTCCCCTGAAGCTCGACGGCAGCTACCGCGACTGGA
CTTGGGTGAAGGACATGAACGTGATGTTCATCGACAATCCCGTGGGCAGT
GGTTTCAGCTACGTGGACGGATCTTCTTACTACACGACCAACAACAAGCA
GATCGCCCTGGATCTCGTTGAGCTGATGAAGGGCTTCTACACAAACCACC
CGGAATTCAAGACTGTGCCGCTGCACATCTTCTGCGAGAGTTATGGCGGA
AAGATGGCCCCGGAGTTCGCTTTGGAGTTGGATTACGCCATCAAGCGCGG
TGAGATCGAGAGCAACTTTGTTTCGGTGGCCTTGGGAGATCCCTGGACCT
CACCCATAGACTCTGTGCTCTCGTGGGCTCCCTTCCTGCTGCAGTTGGGA
ATCGTGGATCAGATGGCCATGACAAGATTGAAGCTTCGGCCCTGAAGACT
AAGGACTATGTTGACCGCGAGAAGTGGACACAGGGCACTTTGCAGTGGAG
CTCCACCCAGTCAGTGGTGCTGCGCGGAGTCAAGGGAGTGGACTTCTATA
ACCTGGAGACCCCAACTTCGGGGGATCAGTTCTGGTTGAGGCCCAAACTC
TGCCTTGACTCCCGGAAGAAGCCATGTATCCCACCCCTCCGTGAATATCG
AAGTTGATAGAGGCCCGCGCCACAATTTGCTGGGAGGAATCCAAGGCTTG
GGAACC
UFO02709.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3344-RA | 1480 | CG3344-RA | 89..1025 | 7..951 | 4085 | 96.2 | Plus |
| CG32483-RA | 1382 | CG32483-RA | 70..604 | 93..627 | 890 | 78.2 | Plus |
| CG31821-RB | 1423 | CG31821-RB | 94..251 | 78..235 | 235 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 686608..687373 | 839..75 | 3615 | 98.4 | Minus |
| 3L | 28110227 | 3L | 689408..689942 | 627..93 | 890 | 77.8 | Minus |
| 3L | 28110227 | 3L | 687802..687870 | 75..7 | 345 | 100 | Minus |
| 2L | 23513712 | 2L | 15902160..15902317 | 235..78 | 235 | 76.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:52:50 has no hits.
UFO02709.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:12 Download gff for
UFO02709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3344-RA | 71..912 | 1..839 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:56 Download gff for
UFO02709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3344-RA | 81..922 | 1..839 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:36 Download gff for
UFO02709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3344-RA | 81..922 | 1..839 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:36 Download gff for
UFO02709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 686631..687372 | 76..816 | 99 | <- | Minus |
| 3L | 687802..687872 | 1..75 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:56 Download gff for
UFO02709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 686631..687372 | 76..816 | 99 | <- | Minus |
| arm_3L | 687802..687872 | 1..75 | 94 | | Minus |
