UFO02713.5prime Sequence
1020 bp (864 high quality bases) assembled on 2009-01-14
> UFO02713.5prime
CAGTCGACATGGAGCCGCCAGCGTCGGCCGGAATCGCCGGCTCGACGCAC
AAGTTCCATCCGTGCGACGAGGCTGTGATAGCCACCAACGACGATGCCAG
CGATTGCAAGCGATGTGCGGTGCGCTTGGGCTACTGGAAGGACGACTACA
TCGGGTACTTTGTGCGCAACCAAGAGCGCAAGGCGCCGGAGATCAATCGC
GGCTACTTTGCCCGTGTCAAGGGCGTGGAGATGTGCGTCGAGAAGTTTCT
AAAGAAAACCTCGGGCAACTGCCAGATCATCAATTTGGGCTGCGGCTTCG
ACACACTCTACTTCCGGCTGAGGGACACCGCCCACCAGGTGAAGAACTTC
ATTGAGCTGGACTTCCCCACGGTCACCGCCCGCAAGTGCTACACAATTAA
GCGCAACAAGGCCCTGCTGGCCAGGATTCACGACGAGGATGGTGAGGTGC
GGCTCAGTCCCACGGATCTGCATGGACCAAGCTACCACCTGATGGGCGTT
GACCTGCGCAACCTCGACGAGGTGGACAGCAAGCTGCAGCAGGCAGAAGT
TGATTACTCCCTGCCCACCATATTTCTCGCCGAGTGCGTTCTGGTCTATA
TCGAGGCGCAAAACTGCCGTAACCTGCTCAAATGGATTGCGCAAAAGTTC
CAAGCAGCCGTCTTTGTCAACTACGAACAGGTCAACATGAACGACCGTTT
CGGCGATGTGATGCTCAACAATCTGCGCGGACGCGGCTGCAGCCTGGCCG
GCGTTGAATCCTGCTTGTCGCTGGATACGCAGAGGAACTGCTTCAGGACA
GCGGCTGGACTGGCCGCCCGCGCCTGGGACATGGTCCAGGTGTACGAAAG
CATCTCGGCGGCCGAGAGGCAGCGAATCGAGCGGCTGGAAATGCTGGACG
AGGTGACTGCTGCTCAGCTTTTCAGCCTACTGCTGTGTTCGCTGCTGGGC
GTGCCTTTCAGAATTAGAAATACACCGTCGAGAAAGTTATGTCCCGCTGA
ACTGACCAAGCTTCCAGACA
UFO02713.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3793-RA | 1582 | CG3793-RA | 156..1161 | 8..1002 | 4530 | 97.7 | Plus |
| CG3793-RB | 1738 | CG3793-RB | 156..1119 | 8..961 | 4480 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15764781..15765217 | 253..689 | 2155 | 99.5 | Plus |
| 2L | 23513712 | 2L | 15764375..15764621 | 8..254 | 1235 | 100 | Plus |
| 2L | 23513712 | 2L | 15765270..15765495 | 678..903 | 1005 | 98.2 | Plus |
Blast to na_te.dros performed 2014-11-28 23:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 520..556 | 260..296 | 113 | 78.4 | Plus |
UFO02713.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:09 Download gff for
UFO02713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3793-RA | 140..1081 | 1..938 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:50 Download gff for
UFO02713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3793-RA | 150..1091 | 1..938 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:51 Download gff for
UFO02713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3793-RA | 150..1091 | 1..938 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:51 Download gff for
UFO02713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15764369..15764621 | 1..254 | 98 | -> | Plus |
| 2L | 15764783..15765208 | 255..680 | 100 | -> | Plus |
| 2L | 15765273..15765528 | 681..930 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:50 Download gff for
UFO02713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15764369..15764621 | 1..254 | 98 | -> | Plus |
| arm_2L | 15764783..15765208 | 255..680 | 100 | -> | Plus |
| arm_2L | 15765273..15765528 | 681..930 | 96 | -> | Plus |
