UFO02715.5prime Sequence
1075 bp (958 high quality bases) assembled on 2009-01-14
> UFO02715.5prime
CAGTCGACATGAATCCGATCAAGGCACAGTCAACGGGCAGTCCCAAGAAA
TTCAACGTATTCGCACACGTCAAGTACGAGCATTTGGTTGCCGGAGTATC
CGGCGGAGTGGTGTCCACACTCATTCTACATCCCCTGGATTTGATCAAGA
TTCGATTCGCAGTTAACGATGGCCGGACAGCTACGGTGCCGCAATACCGG
GGACTGAGCAGCGCCTTCACCACGATTTTCCGGCAAGAGGGCTTCCGCGG
ACTCTACAAAGGCGTCACCCCCAATGTCTGGGGATCGGGCTCCTCTTGGG
GCCTGTACTTCATGTTCTACAACACCATTAAGACATTTATCCAAGGAGGA
AACACGACCATGCCATTGGGCCCCACAATGAACATGCTTGCAGCTGCTGA
GTCGGGAATTCTCACCCTGCTGCTGACCAACCCCATCTGGGTGGTGAAGA
CGCGTCTCTGCCTGCAGTGCGATGCCGCGAGTAGTGCCGAGTACAGGGGC
ATGATCCACGCCTTGGGCCAGATATACAAGGAGGAGGGAATCCGTGGCCT
GTACCGCGGCTTTGTTCCCGGCATGTTGGGCGTCTCCCACGGAGCCATCC
AGTTCATGACCTACGAGGAGCTGAAGAACGCCTACAACGAATATCGCAAA
CTGCCCATCGACACGAAGCTGGCCACCACCGAGTACTTGGCCTTCGCGGC
TGTCTCCAAGCTGATCGCAGCGGCGGCCACCTACCCGTACCAGGTGGTCC
GGGCACGGCTGCAGGACCACCATCACCGATACAACGGCACCTGGACTGCA
TCAAACAGACTTGGAGGTACGAGCGCATGCGAGTTTCTATAAGGCCTGTG
CCCTACCTGGTCCACGTCACGCCCACATCTGCATGGTCATGCTGATCTGG
GAGAAGCTGACAACGCAGCTTTCTAGACATTCGTTGGCGGCCGGGCCCAG
GTAGTGGTCTAATCATATCATAATCAATATCATAATCCACACTAGCTAGA
GATTCTTTCCTTGACTAGTGCTGATTCCACACAATAAAAACGCCCGGCGC
AACGACGTTGGACAAATCCAGATGG
UFO02715.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45085-RA | 2926 | CG45085-RA | 668..1575 | 9..911 | 4415 | 99.4 | Plus |
| CG8026-RB | 2926 | CG8026-RB | 668..1575 | 9..911 | 4415 | 99.4 | Plus |
| CG45085-RB | 1941 | CG45085-RB | 668..1478 | 9..818 | 4030 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9188653..9189008 | 672..317 | 1780 | 100 | Minus |
| 2R | 25286936 | 2R | 9188021..9188266 | 911..671 | 985 | 97.2 | Minus |
| 2R | 25286936 | 2R | 9189067..9189224 | 316..159 | 790 | 100 | Minus |
| 2R | 25286936 | 2R | 9191276..9191429 | 162..9 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:52 has no hits.
UFO02715.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:08 Download gff for
UFO02715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8026-RB | 661..1578 | 1..916 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:51 Download gff for
UFO02715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8026-RB | 662..1579 | 1..916 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:34 Download gff for
UFO02715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8026-RB | 662..1579 | 1..916 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:34 Download gff for
UFO02715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9191276..9191435 | 1..162 | 97 | | Minus |
| 2R | 9188654..9189008 | 317..671 | 100 | <- | Minus |
| 2R | 9189067..9189220 | 163..316 | 100 | <- | Minus |
| 2R | 9188021..9188265 | 672..911 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:51 Download gff for
UFO02715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5075526..5075770 | 672..911 | 97 | <- | Minus |
| arm_2R | 5076159..5076513 | 317..671 | 100 | <- | Minus |
| arm_2R | 5076572..5076725 | 163..316 | 100 | <- | Minus |
| arm_2R | 5078781..5078940 | 1..162 | 97 | | Minus |
