UFO02716.5prime Sequence
1027 bp (865 high quality bases) assembled on 2009-01-14
> UFO02716.5prime
CAGTCGACATGACGGAAAGCAGCAGTAGCACCAAATCCCGCCTAGCGGTG
GCGCCCACCGGAGTTGGAGGAGCAGCCGAGGGAGCCACATACATACGCAC
CATCGAATGGGACATGATGAACAAGACCAAGTTCTTTCCGCTCTCCATGC
TCAGCTCGTTTTCGGTGCGCTGCTGCCTATTCCCGCTGACCGTGATCAAG
ACGCAATTGCAGGTGCAGCACAAGAGCGATGTGTACAAGGGCATGGTGGA
TTGCGCCATGAAGATCTACCGATCGGAGGGAGTGCCCGGTCTGTATAGAG
GTTTCTGGATCTCCTCCGTGCAAATAGTGTCCGGCGTCTTTTACATAAGC
ACCTACGAGGGCGTGCGCCATGTGCTCAACGATCTGGGTGCTGGGCATCG
AATGAAGGCCCTCGCCGGCGGCGGTTGCGCCTCGCTGGTGGGCCAGACCA
TCATAGTTCCTTTCGATGTGATATCGCAGCACGCCATGGTGCTCGGGATG
TCGGCCCATGCCGGTTCCAAGGGCGATATCAATCCGCTGGGCATTAAGTC
ATGGCCCGGTCGCAGTCGCCTGCACATTTCCATGGACATTGGCAGGGAGA
TAATGCGGCGCGATGGCTTCCGGGGCTTCTACCGCGGCTACACCGCCAGC
CTGATGGCCTACGTACCGAATTCGGCCATGTGGTGGGCCTTCTATCATCT
CTATCAGACGAACTGTTTCCGCATCTGCCCCGTTTGGGTGTCCCATCTGT
TTATCCAGTGCGTGCCGGCAGTTTAAGTGGCTTCACAACGACAATACTAA
CCAATCCTTTAGATATAGTGCGTGCCCGTCTGCAGGTCAACCGCTTGACT
CGATGAGCGTCCCTTCAGGGCTGTGCAGAGAGAGCTGACTGCTTCTCAAG
GACTGTCCGCCCGCCTGGTGCAGTCGCAGCCTTTCTCATTCAGCATTATT
TCTAAGTTACAGAACGATCACGCATGCGTGACGACAGTACAGCATCAGAT
CCGCTGGCAAGCTTTAACATCGTTGGC
UFO02716.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5805-RB | 2151 | CG5805-RB | 288..1304 | 9..1007 | 4415 | 97.1 | Plus |
| CG5805-RA | 2036 | CG5805-RA | 358..1374 | 9..1007 | 4415 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24785974..24786672 | 707..9 | 3495 | 100 | Minus |
| 3R | 32079331 | 3R | 24785785..24785917 | 837..705 | 555 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:33:37 has no hits.
UFO02716.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:06 Download gff for
UFO02716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5805-RA | 352..1376 | 1..1010 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:25 Download gff for
UFO02716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5805-RA | 353..1377 | 1..1010 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:16 Download gff for
UFO02716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5805-RA | 353..1377 | 1..1010 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:16 Download gff for
UFO02716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24785787..24785914 | 708..835 | 97 | <- | Minus |
| 3R | 24785973..24786677 | 1..707 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:25 Download gff for
UFO02716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20611509..20611636 | 708..835 | 97 | <- | Minus |
| arm_3R | 20611695..20612399 | 1..707 | 99 | | Minus |
