UFO02718.5prime Sequence
1076 bp (938 high quality bases) assembled on 2009-01-14
> UFO02718.5prime
CAGTCGACATGGAACTGCATTGGCAGCTGCTGACGTTCATCGTGTGCCTC
CAGTTGTTGCATTCCGCCGGATTCATCATTCAGTCGGAAGTGCGCAAGTG
CACGTACGGCCATATCGATAAGCTGCTCCGGATTCGTTGCTACGACTTGG
ACCTCAAGGAGGTGCCACAGAACCTCAAGAGTTCGGTGGAGGTTCTGGAT
CTATCGCACAATCGCATCAGGAAGCTGAAAACTAGCTCGTTTCAGCGATA
CACGGACATTAAGTTTCTGATGCTCTATGATAACATGATCTTATCGGTGG
AGGTGGGAACCTTCGAGCCACTCACCTCGCTCCAGGAAATTGATCTTTCG
AATAATGGACTGACAACGATACCGCTGGAGTTGTTCCAGCTGCCGCGACT
GAGAAACCTATACATCGATAGCAATGAGCTAACATCCCTCAATCTTCAGG
CACTGGAGAAGCCCATTCGTGCTCCACTGGAGTACCTGAACGTGGCAGGT
TGCGAGCTACAGGAGTTACCCGATCTGGGCATACTTCCAAAACTCTGGCA
ACTGAATGCCTCGATGAATCCGCTGCAGAACTTCAGGATCGACAGCCTGG
CGAATATGTGCCACCTGCAGGTCATCGATCTGACCAAGTCGCAGTTGAGC
CAGTGTGGCTGCCAGCAGGTCACCAACCATCTTATGATGCTCGGCGCCAG
TCCGAAGTTCGTGCCAGTTTGCTTGGAGGCGCTCGACATCCGCGAGTGTC
CACTGCCCTACAATCGAACGATCCATTCGCCAACATTCGCCAGTTGCCAG
ACGACACTGCAGTTTGCCGAAACGCGCAGCTTCTGGCTCTTTGGAGCTGG
CTGCTTTGGCGGAGTTTGTTTGTGCTTTTAATGTCATCTCTGCGTGATAC
ACTGTAGAGAACGAGCCCAGCGACGAAGAGATGCCCAGAGCGAAGCGTTG
TGATCTCGCCAGAACGCATCACAACGTCAGCGAGACGAGCTCTGCCTGGG
ATATGCCGAAGCAGCTTCTAGACATCGTGGCGGGGCAGTATGCCTAAATC
TATCTAATCTATCTATCAACTAGCCT
UFO02718.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lapsyn-RA | 1630 | CG15658-RA | 299..1318 | 8..1004 | 4540 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21198226..21198434 | 332..540 | 1045 | 100 | Plus |
| 2R | 25286936 | 2R | 21197610..21197795 | 8..193 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 21198492..21198677 | 541..726 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 21198019..21198165 | 190..336 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 21198761..21198917 | 726..881 | 735 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:29:35 has no hits.
UFO02718.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:04 Download gff for
UFO02718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15658-RA | 290..1288 | 1..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:44 Download gff for
UFO02718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lapsyn-RA | 292..1290 | 1..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:25 Download gff for
UFO02718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lapsyn-RA | 292..1290 | 1..981 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:25 Download gff for
UFO02718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21198021..21198164 | 192..335 | 100 | -> | Plus |
| 2R | 21198230..21198434 | 336..540 | 100 | -> | Plus |
| 2R | 21198492..21198677 | 541..726 | 100 | -> | Plus |
| 2R | 21198762..21198917 | 727..881 | 99 | -> | Plus |
| 2R | 21197605..21197793 | 1..191 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:44 Download gff for
UFO02718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17085526..17085669 | 192..335 | 100 | -> | Plus |
| arm_2R | 17085110..17085298 | 1..191 | 98 | -> | Plus |
| arm_2R | 17085735..17085939 | 336..540 | 100 | -> | Plus |
| arm_2R | 17085997..17086182 | 541..726 | 100 | -> | Plus |
| arm_2R | 17086267..17086422 | 727..881 | 99 | -> | Plus |
