UFO02719.5prime Sequence
1022 bp (906 high quality bases) assembled on 2009-01-14
> UFO02719.5prime
CAGTCGACATGTTCTGGGTGGACCTGTTCGATTGGATCATGCACAAGGAA
ATGGCTCTGGCCCCCGACACACGTGTCTATGAAAATTGGAAGAGTCCGCC
AATTGATCTCAGTCTGGACATCTACCTGTACAACTGGACGAATCCGGAGG
ATTTCGGCAACCTTTCCACAAAGCCCATTCTGGAGCAGGTGGGTCCTTAT
CGTTTTATCGAGCGACCCGATAAGGTGGACATTCACTGGCATCCAGAAAA
TGCATCCGTCACTTATCGCAGGCGCAGCTTGTTCTACTTTGATGCGGCGG
GCAGTAATGGCAGCCTGGACGATGAGATTACCACGCTTAATGCAGTGGCT
CTGTCTGCAGCCGCCACAGCCAAATATTGGCCACCAGTTAAGCGCTCCCT
TGTCGATGTGGGACTAAAGATGTACGGTGCCGAGATGTCTGTCCAAAAAT
CGATCGATGAGCTGCTCTTCACCGGTTACAATGACGCAATGATCGACGTG
GCCATGGCCATGCCCATTTTTGGTGATGAGGTGAAGGTTCCATTCGATAA
GTTCGGTTGGTTCTATACGCGCAATGGAAGTGCCGATCTTACCGGAGTTT
TTAATGTCTTCACTGGCGCCGATCAACTGGCCAAACTGGGTCAGATGCAC
TCGTGGAATTACCAGGAGAACACTGGATTCTTTGATTCCTATTGCGGTAT
GACCAATGGATCCGCCCGGGAGTTCCAGCCACAGCATCTGAAGCCCGGCG
ATAGTGTTGGTCTATTTACGCCCGATATGTGCCGAACTATTCCGCTGGAT
TATGTGGAAACTGTGGATATTGAAAGACTGGAATGTTATAAATTCTCAGC
GACCACGATCTTGTAGAAAATGGCACCCAGTATCCTGAGAACCTTTGTTT
TTTGTGGTGCAATGTGTTCGTCGGTGTGATGACATCAGTCTGTCGCTTTG
ATCTCTTGTTTTTATGTCTATCACCTTTTCACGCGGATCTACTACCAGAT
CAGTAAAGCTGATCTACGAAGA
UFO02719.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| santa-maria-RC | 5563 | CG12789-RC | 3699..4710 | 8..1003 | 4515 | 97.3 | Plus |
| santa-maria-RA | 2302 | CG12789-RA | 438..1449 | 8..1003 | 4515 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7446440..7446936 | 849..353 | 2440 | 99.4 | Minus |
| 2L | 23513712 | 2L | 7446996..7447303 | 353..46 | 1540 | 100 | Minus |
| 2L | 23513712 | 2L | 7447502..7447546 | 52..8 | 210 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:31:43 has no hits.
UFO02719.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:50 Download gff for
UFO02719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| santa-maria-RB | 14..1011 | 1..984 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:13 Download gff for
UFO02719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| santa-maria-RA | 353..1350 | 1..984 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:11 Download gff for
UFO02719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| santa-maria-RA | 430..1427 | 1..984 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:11 Download gff for
UFO02719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7446996..7447301 | 48..353 | 100 | <- | Minus |
| 2L | 7447507..7447549 | 1..47 | 91 | | Minus |
| 2L | 7446416..7446935 | 354..872 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:13 Download gff for
UFO02719.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7446416..7446935 | 354..872 | 98 | <- | Minus |
| arm_2L | 7446996..7447301 | 48..353 | 100 | <- | Minus |
| arm_2L | 7447507..7447549 | 1..47 | 91 | | Minus |
