UFO02721.5prime Sequence
1059 bp (879 high quality bases) assembled on 2009-01-14
> UFO02721.5prime
CAGTCGACATGGAGAGTGCCCTGCCGGTGGCCGAGTTTCAGCAGATAAAG
CTGCGTCCGGTGCCAAAGGTCAAACGCCGAGCCCCTCAGCCGCCAGTGAG
CCTTCGCCTGAAGCATAAAAATACTTCTGCCACCACAAAGACAACCACGC
TCACCACCCCCGCCAAACTGTATGGCAAGGATCTGAGTGAGTACGATGAT
GTGGATGTGGAGAGCCTGCTGGCCCAGCTCTCCCCCGAGGAGATAACCAT
ACTGGCCAAAGAAGTGGATCCCGATGACAACTTCCTGCCGCCAGACCAGC
GCAATAGCTATGAGTGCACCAAGGAAGCCACCGGGCCTCTCAATCGCAAG
CAGCTGATCGAGCACATCAATAAGCAGGCCATCGAGACCCCGGATCAGCC
GGAGTTCGAGCCGTTCGTTCAGGGCAAGGTTCGTGGAAAGAAGTGGGTCC
CACCGCCAAGGGATGCCCGCGACATCGAGGCCGAAGAACAAATCGCCATT
GACATGGGCGAGGAGTACGAACACGCCCTTAACGATGCCACGCAGGAGGA
GATCATCGATCTGGCCGCCATCCTCGGCTTCCACTCGATGATGAATCAGG
ACCAGTACCACGCCTCCTTGCTCAACAAGGGTCAGCCCGTGGGCCTGGGA
TGGGATGGCATTACGAAATCCACTCAGCAGAAGCTCTTCCCTATGGATCC
GCCCAACAACACAGATGTGGAGGAATCCATCAAGCGGGTCAAGACGATGA
CTCCAGCTGATTGACCTCACTTGAACAACATTAAGAACATCTCGGACGAG
AACTCGAGCAACTGTTTGCCGCACTGCTTAAAACGAACATTTGGAAAGTC
CTCTCGCTACAAATGTGGGCTCCACGACAAGAACGCCCTCCTGTTAGCGC
GCCATAGAGAAAAGCAATCCTGAAAGTATTAATGTCGAGACCACTTTATC
AGTCCGCCGTGATTGTAAGTGGGCAGCCTGCTCAAGTGCACACATCGAGG
AGTTAGGCCTCATCACGCCTGCGTTTCGGGCACACAGAATCGAGAATGAA
ATCCCGACT
UFO02721.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-RB | 2508 | CG1539-RB | 160..1236 | 9..1058 | 4415 | 95.7 | Plus |
| tmod-RJ | 2753 | CG1539-RJ | 519..1481 | 123..1058 | 3845 | 95.2 | Plus |
| tmod-RI | 3000 | CG1539-RI | 766..1728 | 123..1058 | 3845 | 95.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30572023..30572535 | 276..785 | 2415 | 99.4 | Plus |
| 3R | 32079331 | 3R | 30571809..30571962 | 123..276 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 30571316..30571429 | 9..122 | 570 | 100 | Plus |
| 3R | 32079331 | 3R | 30572597..30572780 | 784..958 | 280 | 88.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:14:15 has no hits.
UFO02721.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:49 Download gff for
UFO02721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RB | 151..1192 | 1..1018 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:01 Download gff for
UFO02721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RB | 151..1192 | 1..1018 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:30 Download gff for
UFO02721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RB | 151..1192 | 1..1018 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:30 Download gff for
UFO02721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30571307..30571429 | 1..122 | 96 | -> | Plus |
| 3R | 30571809..30571961 | 123..275 | 100 | -> | Plus |
| 3R | 30572023..30572535 | 276..785 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:01 Download gff for
UFO02721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26397029..26397151 | 1..122 | 96 | -> | Plus |
| arm_3R | 26397531..26397683 | 123..275 | 100 | -> | Plus |
| arm_3R | 26397745..26398257 | 276..785 | 99 | -> | Plus |
