UFO02722.5prime Sequence
1054 bp (925 high quality bases) assembled on 2009-01-14
> UFO02722.5prime
CAGTCGACATGCCTCGCTCTGATACGGAGGCTTTGGTGGCCGATGTGGAG
ACTGGCGAAGATTCGGCACCACGCATACTGGACGCATCATCTGCGGCCAG
CAGTGAGCAGGTGGACCCGCCTCCGGTACCGCCGCCTCATGACTACAGCA
GCTATCGCTGGTTCATCCTGGAGCCCGCAGTTTTTTTAATCTTCTTCGCC
AGAAATTTAATTGGGGCGGTTTATCAGAACCAAATTCTCTACCAAACCTG
CATCACCATCGAGAAATTCAATGCCACGCAATGTGAACCGCTGCTGGGCA
TTGATCGCGGATCGGACGCGGATAAAGAAGTCGAGGTGATAGTACAGACG
TATTCTGCAAATATTATGATGACAACCTCTCTGCTAGAGAGCATTATTCC
TGCCTTCGCGAGTCTGTTCCTGGGTCCCTGGTCCGACAAGTTCGGAAGGC
GGCCAATCCTGCTGACAACTTTTACGGGCTACCTCACTGGCGCACTCATA
CTGATAGTAATCACTTACATAACGAGGTCCACGAATATAAGTCCATGGTG
GTTCCTCCTTTCCTCGGTTCCTTCCGTCGTAAGCGGCGGAACTTGCGCCT
TGATTACTGGAATCTATTGCTACATATCCGATGTGGCCAAGGAGCGAAAG
AAGGCTCTGAGAATGGTCCTCAATGAAGCCTCCCTCTGTGCTGGCATAAT
GGTGGGCAATGTGGCCAGCGGTTATATCTATGCTGCCAAAAATGCTCTGG
TGTTGTTTTCATTGCTGGTAGCCTGATGATGTTTGCCTTGATGTACGTGC
TTCTGTTTTGTACCTGAAAGCCTAAATCCAGGTGACATTCACCACCGGAT
CGCGAGTCCGTGAGTTCTTCCGTTTCGATTGGTCACGGACCTGATTCGCA
CTGCTTTAAGAGGCGCCCAACTTTGATCGCACAATCATCTGGCTAACATG
ATTGCCCTACGATAGCCATTTTCGACATGGAAGGAGAGAGCACGAAATAC
GGTTCGGACGAGAAAAATCACCTGAACGTTAAAGACTCAGCTATCCAACG
CATC
UFO02722.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30344-RA | 2147 | CG30344-RA | 328..1316 | 9..993 | 4710 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9145587..9145792 | 9..214 | 1030 | 100 | Plus |
| 2R | 25286936 | 2R | 9146862..9147046 | 477..661 | 925 | 100 | Plus |
| 2R | 25286936 | 2R | 9147113..9147295 | 660..842 | 805 | 98.4 | Plus |
| 2R | 25286936 | 2R | 9146646..9146797 | 327..478 | 760 | 100 | Plus |
| 2R | 25286936 | 2R | 9145859..9145973 | 213..327 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 9147363..9147498 | 850..980 | 415 | 95.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:26:35 has no hits.
UFO02722.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:11 Download gff for
UFO02722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30344-RA | 335..1344 | 1..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:28 Download gff for
UFO02722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30344-RA | 324..1333 | 1..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:46 Download gff for
UFO02722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30344-RA | 324..1333 | 1..1006 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:46 Download gff for
UFO02722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9145583..9145791 | 1..213 | 98 | -> | Plus |
| 2R | 9145860..9145972 | 214..326 | 100 | -> | Plus |
| 2R | 9146646..9146796 | 327..477 | 100 | -> | Plus |
| 2R | 9146863..9147046 | 478..661 | 100 | -> | Plus |
| 2R | 9147115..9147301 | 662..849 | 97 | -> | Plus |
| 2R | 9147363..9147498 | 850..980 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:28 Download gff for
UFO02722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5033365..5033477 | 214..326 | 100 | -> | Plus |
| arm_2R | 5033088..5033296 | 1..213 | 98 | -> | Plus |
| arm_2R | 5034151..5034301 | 327..477 | 100 | -> | Plus |
| arm_2R | 5034368..5034551 | 478..661 | 100 | -> | Plus |
| arm_2R | 5034620..5034806 | 662..849 | 97 | -> | Plus |
| arm_2R | 5034868..5035003 | 850..980 | 95 | | Plus |
