UFO02726.5prime Sequence
1081 bp (968 high quality bases) assembled on 2009-01-14
> UFO02726.5prime
CAGTCGACATGCAGGCGGTGCTCCAATCTGCGCACAGCAGCAGGCGGCTA
ATGCTGTTGCTCTCCATGCTGCTCAATGCCGCTATTCAGCCACGGTCCAT
TATTGTGAGTGCTACTGATGATGTCGCCAATGTGTCGCCGTGCGAAATGG
AGTCCCTTATAAATCAACTGATGAGCCCCAGTCCCGAGTACCAGCTTCAC
GCCTCCGCATTGCGCAATCAACTGAAAAACTTACTTCGGGAAAGACAGTT
GGCCGTGGGCGAAGAACAGCCTTTGGGCGAGTACCCCGATTATCTGGAGG
AGGACAAACGTTCGGTGGCCGCACTGGCCGCCCAAGGCCTCCTTAACGCT
CCGAAGAGAAGCTTGGCCACTCTGGCTAAAAACGGGCAACTGCCCACGGC
AGAGCCTGGAGAGGATTACGGCGACGCGGACTCCGGAGAACCGAGTGAAC
AGAAGCGCTACATCGGCTCCTTGGCCAGGGCCGGCGGATTGATGACATAT
GGAAAGCGCAACGTGGGCACCCTGGCCCGCGACTTCCAGCTGCCTATTCC
CAACGGCAAGCGAAACATCGCAACTATGGCCCGTCTGCAGAGTGCTCCCT
CCACCCACCGAGATCCAAAGCGCAATGTGGCCGCCGTCGCACGCTACAAC
TCGCAGCACGGTCACATCCAGCGTGCTGGGGCCGAGAAACGTAACCTGGG
AGCTCTGAAGTCCTCGCCGGTCCACGGAGTGCAGCAGAAGCGCGAGGATG
AAGAGATGCTGTTGCCCGCGGCCGCCCCCGACTACGCCGATCCCATGCAG
AGCTACTGGTGGTACCCCAGCTACGCCGGGTACGCCGACCTCGACTGGAA
CGATTATCGCCGGGCAGAGAAGCGATTTCTAGGCGGGTACTTCACAACAC
GAGCGACTGCGTCACCACCGCAGCCGTTTGGCAGCTTTCTAGACATTCGT
TTGGCGCGCGGGCCCAGGTATGGTCATAATCATATCATATCATATCATAT
CACACTAGCTAGAAATCTGTCATGACTATGTCTGGATCTCACAATTAAAC
GCCCGCGGCACAACGTTCTGACCATTCGATG
UFO02726.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp1-RA | 2044 | CG3441-RA | 232..1158 | 9..930 | 4505 | 99.4 | Plus |
| Nplp1-RC | 2695 | CG3441-RC | 232..1105 | 9..882 | 4355 | 99.9 | Plus |
| Nplp1-RB | 2313 | CG3441-RB | 232..1105 | 9..882 | 4355 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25036845..25037539 | 197..891 | 3415 | 99.4 | Plus |
| 2R | 25286936 | 2R | 25036593..25036713 | 81..201 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 25032608..25032680 | 9..81 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:49:47 has no hits.
UFO02726.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:47 Download gff for
UFO02726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp1-RA | 221..1160 | 1..935 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:43 Download gff for
UFO02726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp1-RA | 224..1163 | 1..935 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:42 Download gff for
UFO02726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp1-RA | 224..1163 | 1..935 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:42 Download gff for
UFO02726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25032600..25032679 | 1..80 | 96 | -> | Plus |
| 2R | 25036593..25036712 | 81..200 | 100 | -> | Plus |
| 2R | 25036849..25037530 | 201..882 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:43 Download gff for
UFO02726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20920123..20920202 | 1..80 | 96 | -> | Plus |
| arm_2R | 20924116..20924235 | 81..200 | 100 | -> | Plus |
| arm_2R | 20924372..20925053 | 201..882 | 99 | -> | Plus |
