UFO02727.5prime Sequence
873 bp (771 high quality bases) assembled on 2009-01-14
> UFO02727.5prime
CAGTCGACATGGCCATGTACCGCGCCAGTGGGTTAAGGATTATGCAACAG
ATGCGACGCAGGATTCCCGTCGAACTGCAGCCACTCCAAGTGGCCAAAGC
TGCGCCTGCGCTGCAAACTTTCACTTCTCAGCGCTGGACTTCGACGACGA
CGACCAGTGGAAAGCATGCCAGTCCACAGGTTACGACCCCGCCCCCGAGA
CACGACTGGAATAGGGCGGTCAGCGAGGCGGAGCGCATCGTCGGCTATCC
CACATCCTTCCTCAGTCTGCGCTGGCTGCTCAGCGACGAGATCGCCAATG
TGGCGCTGCACCTGCGCAAACTGGTGGGCAGCGCCCATCCGCTGATGAAG
ACGGCCAAGCACCTGCTCTACAATGGCAAGAACACGATGCAAGCCTGGGG
ATTGATAGTGCTCCTGGTGTCCAAGGCCGCAGGACATGCACCCAGTGTTC
CAGACGTGGAGCAGGACAAGAGTGCCGGAGTGCTGCACTCCCAAAGGGCT
TTGGCCGAGGTCACCGAGATGATACGGATATCTCATCTGGTGCACAATAG
CGTGGTTAATCTGCAATCGAGCACGCAGCTGGGCAGGATGTGGACACCTA
CGACGACATGTCGTTTGGCAACAAGATCGGCCTGCTGACCGGCGACTATC
TTCTGGGCCATTCCAGTGCGGAGCTGGCTAATCTGCGCAACCAGGAGGTG
GTGGAGCTGATCCTCGTCCGGCGGTGCGAGATTTTTCCGAGTCGAATTCA
TTGAGAAGCGTGATGACCAGAAACACCCGCTTGCCTTATAGCCCGGAACC
TGCAGCGACCATCTCCTCCAGCGTTGGAGTGTATTCACCGAGCACGACGT
GATGGACCCCAATGCCGATTGCT
UFO02727.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10585-RB | 1699 | CG10585-RB | 103..965 | 9..872 | 3905 | 97.6 | Plus |
| CG10585-RA | 1990 | CG10585-RA | 394..1256 | 9..872 | 3905 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21028308..21028658 | 9..359 | 1755 | 100 | Plus |
| 3L | 28110227 | 3L | 21029085..21029407 | 549..872 | 955 | 91.8 | Plus |
| 3L | 28110227 | 3L | 21028716..21028905 | 359..548 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:50:39 has no hits.
UFO02727.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:46 Download gff for
UFO02727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10585-RA | 414..1276 | 9..873 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:14 Download gff for
UFO02727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10585-RA | 394..1256 | 9..873 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:13 Download gff for
UFO02727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10585-RA | 394..1256 | 9..873 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:13 Download gff for
UFO02727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21028308..21028657 | 9..358 | 100 | -> | Plus |
| 3L | 21028716..21028905 | 359..548 | 100 | -> | Plus |
| 3L | 21029085..21029407 | 549..873 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:14 Download gff for
UFO02727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21021816..21022005 | 359..548 | 100 | -> | Plus |
| arm_3L | 21021408..21021757 | 9..358 | 100 | -> | Plus |
| arm_3L | 21022185..21022507 | 549..873 | 93 | | Plus |
