UFO02729.5prime Sequence
1104 bp (981 high quality bases) assembled on 2009-01-14
> UFO02729.5prime
CAGTCGACATGTGGATCGCTCTGCTGGGGATCCCGATTTTGTTGGCGGTC
CTAACGCTTCTTCTAAAACACATTAACAAAACCTACTTTATACTTTCATT
AACGAAGCGTGTGCGAACCGAGGATGGCAGTCCATTGGAAAGCAAAGTGG
CCATAATGCCGGGAAAAACGCGATTTGGCAACAACTTGGATATCTTGAAC
TTTACGCCGGCTAGTGTTTTTAATTTTGTGCGCGAGTCCACGGCCAAGGC
CAAGGGTCAGAATTATCTGTGGTATTTTCTATATGCACCCATGTATAATG
TGGTTCGACCCGAGGAAGCTGAGGAGGTATTCCAGAGCACCAAGCTGATA
ACGAAGAACGTGGTTTACGAACTGATTAGACCATTTCTGGGAGACGGACT
CCTGATAAGCACGGATCACAAATGGCATTCCAGACGAAAGGCTTTAACGC
CCGCCTTTCACTTCAATGTCCTGCAGTCATTCCTGGGTATTTTCAAGGAA
GAGTGCAAGAAGTTCCTTAACGTTTTAGAGAAAAATTTAGATGCAGAACT
GGAGCTTAACCAGGTTATTCCGCCATTTACTTTGAATAATATATGCGAAA
CTGCTCTGGGTGTGAAGCTGGATGACATGTCGGAGGGCAACGAATATAGA
AAGGCCATCCATGCCATCGAGGAAGTTCTAATTCAACGCGTGTGCAATCC
GCTGATGTACTACAACTGGTATTTCTTCGTTTACGGAGACTATAGAAAGC
ATTTGCAGAATCTTCGAATAGTTCACGACTTCTCCAGTCGCATTATCGAA
CGAAAAAGGCAGCAATTCCAGCAGAAACAACTTGGAGAGTCGATGAATTT
GGCAGGAAGCAGCGATACGCCATGTTGGATACCCTGTTAGCAGCCGAAGC
AGATGGTCAGATCGATCATCAGGTATCTGCGATGAGTCAATACCTTTATG
TCGAGGGTTACGATACTACGTCCACTGTCTAATATTACCCTATTGATGCT
GCTCTCCACGAGATGTCCAGGAGAGTGCTTATGAGGAGGTGGAAAATCTC
CGAAGAACGCGATGACCTCTGTGTTTCAAGTCACACTAGTCAACTTTGGA
TGTG
UFO02729.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4ac1-RA | 1666 | CG14032-RA | 34..1144 | 9..1104 | 5000 | 97.5 | Plus |
| Cyp4ac3-RA | 1606 | CG14031-RA | 49..1028 | 9..983 | 1415 | 77.1 | Plus |
| Cyp4ac2-RB | 1709 | CG17970-RB | 193..1081 | 158..1038 | 1045 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5264855..5265315 | 597..1049 | 1815 | 97 | Plus |
| 2L | 23513712 | 2L | 5264295..5264499 | 210..414 | 1025 | 100 | Plus |
| 2L | 23513712 | 2L | 5264034..5264235 | 9..210 | 1010 | 100 | Plus |
| 2L | 23513712 | 2L | 5269360..5269717 | 597..951 | 635 | 80.4 | Plus |
| 2L | 23513712 | 2L | 5267624..5267788 | 842..1001 | 515 | 94.5 | Plus |
| 2L | 23513712 | 2L | 5264696..5264796 | 497..597 | 505 | 100 | Plus |
| 2L | 23513712 | 2L | 5264557..5264644 | 414..501 | 425 | 98.9 | Plus |
| 2L | 23513712 | 2L | 5268546..5268728 | 9..191 | 300 | 77.6 | Plus |
| 2L | 23513712 | 2L | 5268823..5269000 | 234..411 | 290 | 77.5 | Plus |
| 2L | 23513712 | 2L | 5266748..5266896 | 264..412 | 250 | 77.9 | Plus |
Blast to na_te.dros performed 2014-11-28 19:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5065..5144 | 639..717 | 118 | 62.5 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 6521..6600 | 639..717 | 118 | 62.5 | Plus |
UFO02729.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:45 Download gff for
UFO02729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4ac1-RA | 27..1101 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:33 Download gff for
UFO02729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4ac1-RA | 27..1101 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:22 Download gff for
UFO02729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4ac1-RA | 27..1101 | 1..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:22 Download gff for
UFO02729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5264027..5264235 | 1..210 | 98 | -> | Plus |
| 2L | 5264296..5264499 | 211..414 | 100 | -> | Plus |
| 2L | 5264558..5264639 | 415..496 | 100 | -> | Plus |
| 2L | 5264696..5264796 | 497..597 | 100 | -> | Plus |
| 2L | 5264856..5265334 | 598..1066 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:33 Download gff for
UFO02729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5264027..5264235 | 1..210 | 98 | -> | Plus |
| arm_2L | 5264296..5264499 | 211..414 | 100 | -> | Plus |
| arm_2L | 5264558..5264639 | 415..496 | 100 | -> | Plus |
| arm_2L | 5264696..5264796 | 497..597 | 100 | -> | Plus |
| arm_2L | 5264856..5265334 | 598..1066 | 96 | | Plus |
