UFO02735.5prime Sequence
974 bp (195 high quality bases) assembled on 2009-01-14
> UFO02735.5prime
CAATCCACATGGCAACCACTCCACGCAGCGGCGGTGCCAGCGGCACTGGA
ACGGCGCATCGGCCCATTGGCACCTCGCAAAACAAAAGCTGCCAATTCAA
GTTGGTGCTCCTCGGGGAGTCCGCTGTGGGCAAGTCCTCACTGGTGCTGC
GCTTCGTCAAGGGACAGTTCCACGAGTACCAGGAGAGCACGATAGGTGCG
GCCTTTCTGACACAGACTATTTGCATAGAGGACACTGTCGTTAAGTTCGA
GATCTGGGACACGGCTGGCCAGGAGCGGTACCACAGCTTAGCTCCCATGA
ATTATCGAGGAGCGCAGGCCGCTATTGTCGTCTATGATATACAGAATCAG
GACAGTTTTCATCGTGCGAAGACCTGGGTCAAGGAACTGCATAAACAAGC
CTCACCAAACATTGTCATTGCGCTGGCCGGCAACAAGGCAAATTTGTCAA
ACATTCCCGTCGAATAGTTCGATGAAGCGAAGCAATATGCCGAGGAGAAC
GGGCTGCTGTTCATGGAAACCTCCGCCAGACGGGCATGAATGTGAACGAC
ATCTTCTTGGCCATTGCCAAGAAACTACCTAAGAACGATGGCGCCACAAT
CAAGGAACCAGCATAAGTGCCGACTGGAACCGAAACATATCGACCGACGA
CAACTGCTGCTAGGTGAGCTTTCTATACCATTCGTTTGGCGCGCGGGCCA
AGTAAGTGGTCATATCATAATCATAATCATAATCATAATCGCACTAGCCT
AGAGATCTTGGCATGACTAGTGCTTGGAATTCTCACAATAGAAAACGCCC
GGTGGCAACCGAGCGTTCTGAACAGATCCAGAATGGAGTTCTGAGGTCTT
TACTGGATCATTTCATCGGGAGTCCAAGCAAGTCGAAATCTAATTAACGC
CCGCCCCGCCTCTCATCGCAATACTGTTGTATTCATTAAGCATCTGCGAA
TGGAAGACATCACATACGGTATGT
UFO02735.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab5-RI | 1775 | CG3664-RI | 274..928 | 8..660 | 3000 | 97.6 | Plus |
| Rab5-RH | 1772 | CG3664-RH | 275..929 | 8..660 | 3000 | 97.6 | Plus |
| Rab5-RG | 1785 | CG3664-RG | 284..938 | 8..660 | 3000 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2361157..2361429 | 280..8 | 1305 | 98.5 | Minus |
| 2L | 23513712 | 2L | 2360633..2360801 | 566..399 | 735 | 97 | Minus |
| 2L | 23513712 | 2L | 2360971..2361093 | 399..277 | 585 | 98.4 | Minus |
| 2L | 23513712 | 2L | 2360475..2360570 | 660..566 | 305 | 94.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:12:32 has no hits.
UFO02735.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:48 Download gff for
UFO02735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab5-RF | 211..880 | 1..667 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:08 Download gff for
UFO02735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab5-RG | 275..944 | 1..667 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:16 Download gff for
UFO02735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab5-RG | 275..944 | 1..667 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:16 Download gff for
UFO02735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2361160..2361433 | 1..277 | 97 | | Minus |
| 2L | 2360469..2360569 | 567..667 | 93 | <- | Minus |
| 2L | 2360633..2360801 | 399..566 | 97 | <- | Minus |
| 2L | 2360972..2361092 | 278..398 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:08 Download gff for
UFO02735.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2360469..2360569 | 567..667 | 93 | <- | Minus |
| arm_2L | 2360633..2360801 | 399..566 | 97 | <- | Minus |
| arm_2L | 2360972..2361092 | 278..398 | 98 | <- | Minus |
| arm_2L | 2361160..2361433 | 1..277 | 97 | | Minus |
