Clone UFO02738 Report

Search the DGRC for UFO02738

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:27
Well:38
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG6340-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO02738.5prime Sequence

1072 bp (977 high quality bases) assembled on 2009-01-14

> UFO02738.5prime
CAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACGACCAGGAG
GATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAACTGCGGCA
TTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTTATTAAAGC
AGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCGGCAAGGAA
CGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCGATGTCGCA
GCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGAGGAGCCGA
AGCCCAGCAGTCGCCACCGCCAGGAGCGGGACAAGGACAGGGAACGGGAC
CGCGACCGCGAACGTGACAGGGACAAGGACAAGAAGCGCAGCGATTCAGA
ACGCAGTCGCGACAAAGGACGCGACAAGAATCACAGCAAGGGCGACCATC
GCCACCATCGTACCAAAGACGGCGACAGCCACAGAGAGCGGGAGCGGGAT
CGTGACCGGGAGAGGGAGCGAGATCGCGACAAGGATCGGGACCGTAGGCG
TTCGGAGAAGAGCAGTCGCCACCACAGTGGCAAGGAACGCCATCATCATC
ATCACAACAACTCATCGTCAGCCGCCGCTGCAGCGGTCAGTGCAGCATCA
GTCCGTCGATCCCATGATGAACGCAGTCGTCGTCGCCGGGACTCTCGATC
CGGTTCCCGCACACCAACGGGGCACGCCGCCCTCTCGTCGCCGCCATCAG
TCGCAACAGTCACGCAAATATCGCGAACGCGACTCCAGCAGCCGCTCCAG
ATCTCCGAAAGGAAGAACAAGCCACAACACTTCGCGGTGGGAGCTGGTGG
CCGGATCTATATGCTGCTCGCTAAATCAGGCGGCGGAGCAGGATCAACGG
CAACTAATGCAACAGCAGCGGCGAGGGTGCAGCGGCCGCTCTGGTAGCTG
CCATGCAACAGCCGCAGCCATGGCAGCCCGTTCACCGCGGCGGGGGGGCG
GTCTCTTGCCCACGCCAACTATGGCGCCTAGATACCTCGCTGGAGTGTTC
TGGGAGCTGAGAGCCACCAGCG

UFO02738.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6340-RB 1814 CG6340-RB 102..1156 9..1061 4820 97.9 Plus
CG6340-RE 1831 CG6340-RE 102..1173 9..1061 4640 96.4 Plus
CG6340-RF 2177 CG6340-RF 750..1519 294..1061 3395 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15485330..15485909 439..1016 2395 97.6 Plus
X 23542271 X 15483198..15483421 71..294 1120 100 Plus
X 23542271 X 15485120..15485269 292..441 750 100 Plus
X 23542271 X 15482475..15482538 9..72 320 100 Plus
X 23542271 X 15482855..15482974 86..205 305 87 Plus
Blast to na_te.dros performed on 2014-11-28 20:24:20 has no hits.

UFO02738.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:38 Download gff for UFO02738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 93..1136 1..1042 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:46 Download gff for UFO02738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 96..1139 1..1042 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:04 Download gff for UFO02738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6340-RB 96..1139 1..1042 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:04 Download gff for UFO02738.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15482469..15482537 1..71 94 -> Plus
X 15483199..15483420 72..293 100 -> Plus
X 15485122..15485268 294..440 100 -> Plus
X 15485332..15485937 441..1042 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:46 Download gff for UFO02738.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15376502..15376570 1..71 94 -> Plus
arm_X 15377232..15377453 72..293 100 -> Plus
arm_X 15379155..15379301 294..440 100 -> Plus
arm_X 15379365..15379970 441..1042 97   Plus