UFO02738.5prime Sequence
1072 bp (977 high quality bases) assembled on 2009-01-14
> UFO02738.5prime
CAGTCGACATGGAGGCCCTAGTGAATTATAGTAGTGAGGACGACCAGGAG
GATGCTGGCTTTCAGATACGGGCACCACAACAACAACAACAACTGCGGCA
TTTGCCGCATGCTAAATCCCCGAAAACAACAACTGATAGCTTATTAAAGC
AGAAGAACAACAATAACTATGGCAGCGGCAACAGTCCGCGCGGCAAGGAA
CGAGAAAGAGAGCGCGAGCGGGAGAGAGAGAAGACAAAGCCGATGTCGCA
GCAGCAGAGTCATAGGAGCAGCAGCAGAGGACGCATTGATGAGGAGCCGA
AGCCCAGCAGTCGCCACCGCCAGGAGCGGGACAAGGACAGGGAACGGGAC
CGCGACCGCGAACGTGACAGGGACAAGGACAAGAAGCGCAGCGATTCAGA
ACGCAGTCGCGACAAAGGACGCGACAAGAATCACAGCAAGGGCGACCATC
GCCACCATCGTACCAAAGACGGCGACAGCCACAGAGAGCGGGAGCGGGAT
CGTGACCGGGAGAGGGAGCGAGATCGCGACAAGGATCGGGACCGTAGGCG
TTCGGAGAAGAGCAGTCGCCACCACAGTGGCAAGGAACGCCATCATCATC
ATCACAACAACTCATCGTCAGCCGCCGCTGCAGCGGTCAGTGCAGCATCA
GTCCGTCGATCCCATGATGAACGCAGTCGTCGTCGCCGGGACTCTCGATC
CGGTTCCCGCACACCAACGGGGCACGCCGCCCTCTCGTCGCCGCCATCAG
TCGCAACAGTCACGCAAATATCGCGAACGCGACTCCAGCAGCCGCTCCAG
ATCTCCGAAAGGAAGAACAAGCCACAACACTTCGCGGTGGGAGCTGGTGG
CCGGATCTATATGCTGCTCGCTAAATCAGGCGGCGGAGCAGGATCAACGG
CAACTAATGCAACAGCAGCGGCGAGGGTGCAGCGGCCGCTCTGGTAGCTG
CCATGCAACAGCCGCAGCCATGGCAGCCCGTTCACCGCGGCGGGGGGGCG
GTCTCTTGCCCACGCCAACTATGGCGCCTAGATACCTCGCTGGAGTGTTC
TGGGAGCTGAGAGCCACCAGCG
UFO02738.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6340-RB | 1814 | CG6340-RB | 102..1156 | 9..1061 | 4820 | 97.9 | Plus |
CG6340-RE | 1831 | CG6340-RE | 102..1173 | 9..1061 | 4640 | 96.4 | Plus |
CG6340-RF | 2177 | CG6340-RF | 750..1519 | 294..1061 | 3395 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15485330..15485909 | 439..1016 | 2395 | 97.6 | Plus |
X | 23542271 | X | 15483198..15483421 | 71..294 | 1120 | 100 | Plus |
X | 23542271 | X | 15485120..15485269 | 292..441 | 750 | 100 | Plus |
X | 23542271 | X | 15482475..15482538 | 9..72 | 320 | 100 | Plus |
X | 23542271 | X | 15482855..15482974 | 86..205 | 305 | 87 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:20 has no hits.
UFO02738.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:38 Download gff for
UFO02738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 93..1136 | 1..1042 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:46 Download gff for
UFO02738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 96..1139 | 1..1042 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:04 Download gff for
UFO02738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6340-RB | 96..1139 | 1..1042 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:04 Download gff for
UFO02738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15482469..15482537 | 1..71 | 94 | -> | Plus |
X | 15483199..15483420 | 72..293 | 100 | -> | Plus |
X | 15485122..15485268 | 294..440 | 100 | -> | Plus |
X | 15485332..15485937 | 441..1042 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:46 Download gff for
UFO02738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15376502..15376570 | 1..71 | 94 | -> | Plus |
arm_X | 15377232..15377453 | 72..293 | 100 | -> | Plus |
arm_X | 15379155..15379301 | 294..440 | 100 | -> | Plus |
arm_X | 15379365..15379970 | 441..1042 | 97 | | Plus |