UFO02739.5prime Sequence
646 bp (122 high quality bases) assembled on 2009-01-14
> UFO02739.5prime
CAATCCACATGGACAGAATGCCGAAAGAGGACTACTAATCTCCGGTGTCA
ACGGCTCCTGCCTCACCGACATCGCCGATGGAGTTTAAGATGCTACCGCT
CTTTATGGACTTTGAGGATTTTGGCATTTGCCTCCCTGCTCCTTTCTCGT
ACGATGACAAGGCCATGCTGGAGCTCGAGAGATGGTACTACTCTCTTAGG
ATCACCTATCATATGGCCAGAGCTGGGAAGACGACGCGCAGGGTGCGGGT
CTATGCAGATGGCATATATGATCTGTTCCACCAAGGTCATGCCCGCCAAC
TCTTGCAAGCCAAGAATGTGTTTCCCAACGTCTATCTCATCGTCGGCGTG
TGCCATGATGAGCTGACCCTCAGGATGAAGGGACGCTCGGATATGAATGG
ATTCTAGCGCTACTAGGCGGTGCGCCTCTGCCGCTACATGGATGAGATCA
TTCCGAATGCTCCGTGGACGCTAAATGAGGAGTTTATCGAGGAGCACAAA
ATCGACTGTGTGGACCACGATGACTTACCCGATGGAGCTGGCGGAGTCAA
CTACATATATGCTCCACTCAAAGCGAAGGGAATGTTTGTGGCCACCGCCC
ACGCTGATCGCGTGTCCTCGTCGAGACATTGTGACCCATACTGTGA
UFO02739.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cct2-RA | 1697 | CG18330-RA | 405..1032 | 9..637 | 2535 | 93.6 | Plus |
| Cct1-RF | 2754 | CG1049-RF | 828..1263 | 160..595 | 650 | 76.6 | Plus |
| Cct1-RE | 2564 | CG1049-RE | 906..1341 | 160..595 | 650 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1554079..1554401 | 124..446 | 1345 | 94.4 | Plus |
| 3L | 28110227 | 3L | 1554459..1554650 | 445..637 | 690 | 91.7 | Plus |
| 3L | 28110227 | 3L | 1551515..1551801 | 160..446 | 520 | 78.7 | Plus |
| 3L | 28110227 | 3L | 1553897..1554011 | 9..123 | 500 | 95.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:49:22 has no hits.
UFO02739.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:37 Download gff for
UFO02739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct2-RA | 399..998 | 1..604 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:09 Download gff for
UFO02739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct2-RA | 399..998 | 1..604 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:57 Download gff for
UFO02739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cct2-RA | 399..998 | 1..604 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:57 Download gff for
UFO02739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1553891..1554010 | 1..122 | 92 | -> | Plus |
| 3L | 1554078..1554401 | 123..446 | 94 | -> | Plus |
| 3L | 1554461..1554627 | 447..613 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:09 Download gff for
UFO02739.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1554461..1554627 | 447..613 | 92 | -> | Plus |
| arm_3L | 1553891..1554010 | 1..122 | 92 | -> | Plus |
| arm_3L | 1554078..1554401 | 123..446 | 94 | -> | Plus |
