UFO02740.5prime Sequence
860 bp (745 high quality bases) assembled on 2009-01-14
> UFO02740.5prime
CAGTCGACATGCAGGTCTTCGATAACAATATGCGCCGTGCCTCGCGACGC
GCCTCCTTGCGACGAGGATCCATATCGGCACTGCCGCAGAAGTCGCACGA
GATTCCCTGGGACATATTCGAGCGACTATTCATGCCCTTCCTGTTCTGCC
AGGCGGCGGCCATTGTCACATCGCACCTGCTCCACGCCCTGGACATCTCG
AGCATCTCGACCTTCGCCGTGTTCGTCTGGTTCGCTCTGGCCACCGTGGG
AGCCGTGCTCTTCTATCACTTCGTCAAGGTTTCGGCTTCGGGCAAGGGCG
TGCTAATCACTGGCTGCGAGGCTCCACTGGCCTGGTACTTGGCCAAGAAA
CTGGACGACCTGGGCTTCACCGTTTACGCAGGATTCAACACGCCCATCGA
GGAGTCGGACGAGGCCAAGATTCTCAAGGAGGTGACCTCGGGGCGCATGA
AGCTGCTGCACTTGGACGTCACGTCGGAGAAAACCATCCTGGAAGCTGCC
CGCTATGTGTCGCAGCACTTACCCCACGGCGCCGAAGGATTGTGGTCTGT
GGTGCACTGCGCCCACTGGATAGCTTTGGGTGAACTCGAGTGGATTCCAT
TTGCGGTGCTTCGCAAGAGCTTGGACCTCAACCTTTTGGGTTCCGCTCGG
CTAACACAAATCTTCCTGCCCCTGGTTCGCCGTGCCCATGGTCGGGTCGT
TTCCTGACCTCGGCTGATCGTGTGCCATCTTCCGGTCGGGAATCCAGTGG
TGCACCAGCGCGTGGATTGCTTTGCGCTTTCTGGCCAGGAAATGCCACCC
GGGGATGTGACTGTCTGGTGGCTGCCGGTATTTGCACCCGACCGGTGGCT
GAACAGAACG
UFO02740.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8888-RA | 1708 | CG8888-RA | 225..1092 | 8..854 | 3670 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12077051..12077299 | 280..32 | 1245 | 100 | Minus |
2R | 25286936 | 2R | 12066494..12066702 | 485..277 | 1045 | 100 | Minus |
2R | 25286936 | 2R | 12066006..12066161 | 641..486 | 780 | 100 | Minus |
2R | 25286936 | 2R | 12065884..12065947 | 702..639 | 305 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:49:35 has no hits.
UFO02740.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:37 Download gff for
UFO02740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8888-RA | 216..1073 | 1..840 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:36 Download gff for
UFO02740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8888-RA | 218..1075 | 1..840 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:37 Download gff for
UFO02740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8888-RA | 218..1075 | 1..840 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:37 Download gff for
UFO02740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12066008..12066161 | 486..639 | 100 | <- | Minus |
2R | 12066494..12066700 | 279..485 | 100 | <- | Minus |
2R | 12077053..12077298 | 33..278 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:36 Download gff for
UFO02740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7964558..7964803 | 33..278 | 100 | <- | Minus |
arm_2R | 7953513..7953666 | 486..639 | 100 | <- | Minus |
arm_2R | 7953999..7954205 | 279..485 | 100 | <- | Minus |