UFO02742.5prime Sequence
1078 bp (936 high quality bases) assembled on 2009-01-14
> UFO02742.5prime
CAGTCGACATGGATAATTGGAATGTTTTGGCAGCGCAAACCTCCTCGCAG
GCCATCGGACTCCACGACTCTGGCGTGGTGAAGACCCGACTGACCATTGA
GAAGCTGCCGGACAAGGTGCTGCTGCACATCTTCTCGTATCTGTCGCACC
GCGAGATCTGCCGCCTGGCCAGGATTTGCCGACGATGGCGGCAGATTGCA
TACGACACGCGGCTGTGGAAGAACGTGAGCCTGCGACCGGAGGTCTCCGG
ACTGCACGTGGGCTCGCTGGAGATGCTGCTGCAGCTGATCTCGGTGAGAT
TCGGACCGACTCTGCGCTACATCGAGCTGCCCATCGAGCTGATCACGCAC
ACGGTGCTCCACGAACTGTCCGCCAAGTGCCCCAATTTGACCCACATGCT
GCTGGACTTCTCCACAGCCATGCAGCTGCACGACTTCAGCGAGATGCAGG
CCTTTCCCACCAAGCTGCGCTACATGTGCGTCTGCCTCTCGGAGGTGATC
TTCATGGAGGGCTTCATGCGCAAAATCTACAACTTCATCAACGGCCTGGA
GGTGCTGCATCTAATTGGCACGTACGAGAAGTGCGAGGAGGAGGAGGAGG
AGATCTACGAGGTGATCAACGTGCACAAGCTCAAGTCGGCCACGCCCAAT
TTGCGTGTGATCAACCTGTACGGCATCAACTTCATCGATGACTCGCACAT
CGACGCCTTCAGCTCGAACTGCATCCAGCTGGAGTGCCTGGCCGTCAACT
TCTGCAACAAAGTGACCGGCTCCACCCTGAAGACCCTGATCCAGCGTTCC
AAGCGCCTCATCTGCCTGCTCATGAACGGCACCAGCCTGAAGTCGAGTTC
GTCATGCAAGCCGAGTGGACAGTGCGCCTGCAGGAGCTGGACATCCACGG
CCACGATCTTTCGACGAATGCTCGTGAAATGCTGAGCAGATCCCAGCTCA
GTCCTCTCAGCGCAGATCATGGCTTCAACGACGCGTCTCAGCATGATGAA
TCGGCACACCAGTCGCCTCATTTCCTGAACTGACTTCTCGGAACACACTC
GAATAAGCTGCTAAGTTATAACGGCCAG
UFO02742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2010-RC | 2132 | CG2010-RC | 371..1432 | 8..1042 | 4490 | 96.6 | Plus |
| CG2010-RB | 2255 | CG2010-RB | 494..1555 | 8..1042 | 4490 | 96.6 | Plus |
| CG2010-RA | 1910 | CG2010-RA | 233..1210 | 92..1042 | 4070 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29497385..29497888 | 416..915 | 2205 | 97.2 | Plus |
| 3R | 32079331 | 3R | 29496999..29497324 | 92..417 | 1630 | 100 | Plus |
| 3R | 32079331 | 3R | 29495717..29495801 | 8..92 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:49:24 has no hits.
UFO02742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:35 Download gff for
UFO02742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 464..1481 | 1..998 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:25 Download gff for
UFO02742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 484..1501 | 1..998 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:29 Download gff for
UFO02742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 484..1501 | 1..998 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:29 Download gff for
UFO02742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29495707..29495801 | 1..92 | 95 | -> | Plus |
| 3R | 29497000..29497324 | 93..417 | 100 | -> | Plus |
| 3R | 29497387..29497984 | 418..998 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:25 Download gff for
UFO02742.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25321429..25321523 | 1..92 | 95 | -> | Plus |
| arm_3R | 25322722..25323046 | 93..417 | 100 | -> | Plus |
| arm_3R | 25323109..25323706 | 418..998 | 95 | | Plus |
