UFO02743.5prime Sequence
1104 bp (988 high quality bases) assembled on 2009-01-14
> UFO02743.5prime
CAGTCGACATGGATCTTAGAAAGCATTTGGGTTTATTGACGCTCCTCCTG
GTCGCCGTTTTCGCGTTTTACGGTCGCCCAGCGGATGCCTGCAGCTGCAT
GCCATCTCACCCACAGACGCACTTCGCCCAGGCGGACTACGTTGTGCAAC
TGCGAGTCCTTCGCAAATCGGATACCATCGAGCCCGGCAGGACCACCTAC
AAAGTTCACATCAAACGCACCTACAAGGCTACATCCGAAGCACGACGAAT
GCTACGCGATGGGCGCCTGTCCACGCCCCAAGATGACGCAATGTGTGGTA
TAAATCTCGATCTGGGAAAAGTTTATATAGTAGCGGGTAGGATGCCGACA
TTAAATATATGCAGCTACTACAAGGAGTACACCAGGATGACCATAACAGA
GCGTCATGGCTTCAGCGGTGGATATGCCAAGGCCACCAATTGCACAGTAA
CTCCCTGCTTTGGAGAGAGATGCTTTAAGGGACGAAACTATGCCGATACA
TGCAAGTGGTCGCCTTTTGGAAAATGCGAGACGAACTACAGTGCCTGCAT
GCCGCATAAAGTGCAGACGGTCAATGGAGTGATTTCCCGATGCCGCTGGC
GACGCACGCAGCTCTACAGAAAGTGCATGAGCAATCCGGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGAACTTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTGCGTA
TAATAATTTGCCCATGGTGAAACGGGGCGAGAGTTGTCATATTTGCACAG
TTAATCAAAACTGTGACCTCACAGGAATTGGCTGAACGAAAACATTTTCT
CATT
UFO02743.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Timp-RB | 1591 | CG6281-RB | 319..949 | 8..638 | 3155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10204763..10204991 | 450..222 | 1130 | 99.6 | Minus |
| 3R | 32079331 | 3R | 10204517..10204708 | 638..447 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 10205250..10205383 | 141..8 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 10205092..10205179 | 228..141 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:31:36 has no hits.
UFO02743.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:34 Download gff for
UFO02743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Timp-RB | 296..933 | 1..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:08 Download gff for
UFO02743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Timp-RB | 315..952 | 1..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:08 Download gff for
UFO02743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Timp-RB | 315..952 | 1..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:08 Download gff for
UFO02743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10204513..10204708 | 447..642 | 98 | <- | Minus |
| 3R | 10204767..10204985 | 228..446 | 100 | <- | Minus |
| 3R | 10205093..10205178 | 142..227 | 100 | <- | Minus |
| 3R | 10205250..10205387 | 1..141 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:08 Download gff for
UFO02743.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6030235..6030430 | 447..642 | 98 | <- | Minus |
| arm_3R | 6030489..6030707 | 228..446 | 100 | <- | Minus |
| arm_3R | 6030815..6030900 | 142..227 | 100 | <- | Minus |
| arm_3R | 6030972..6031109 | 1..141 | 97 | | Minus |
