UFO02744.5prime Sequence
1080 bp (952 high quality bases) assembled on 2009-01-14
> UFO02744.5prime
CAGTCGACATGTCGATGCTGGCGAGAACAGTTGGACGGACGTTCATGCAG
GCTGCGGCAGCACGTAGTCTGCACACCACGTCGACGCTACGGGCTACGGA
TAACTACGGCGCCAACAGGACCACCTGCACACTGATTCCCGGCGACGGTG
TGGGTCCCGAGCTGGTCTACTCCCTCCAGGAGGTCTTCAAGGCAGCCAGC
GTTCCCGTGGACTTCGAGTGCTACTTCCTTTCCGAAATCAATCCCGTGCT
TAGTGCCAAACTGGAGGATGTGGTGGCATCCATTCAGAAAAACAAAGTGT
GCATTAAGGGCGTTTTGGCCACACCCGACTACAGCAATGTGGGTGACCTG
CAGACCCTTAACATGAAGCTTCGCAACGACCTGGACCTCTACGCCAATGT
GGTGCATGTGCGCAGCTTGCCCGGTGTCAAGACCCGCCACACCAACATCG
ACACGGTGATTATTCGCGAGCAGACGGAGGGCGAGTATTCGGCGTTGGAG
CACGAGTCGGTGCCCGGCATTGTGGAGTGCCTGAAGATTATCACCGCCAA
AAAGTCCATGCGCATTGCCAAGTTCGCCTTCGACTATGCGACGAAGAATC
AGCGCAAGAAGGTCACCGCCGTGCAAAGGCGAATATCATGAAGTTGGGCG
ACGGTCTCTTCCTACGCTCCTGCGAAGAGGTTTCCCGGCTCTATCCGCGC
ATCCAGTTTGAGAAGATGATCGTGGACAACACGACCATGCAGATGGTTTC
CAATCCCAACCAGTTCGACGTGATGGTCACCCCCAATCTCTATGGTGCCA
TTGTGGACAATCTGGCCAGTGGTCTCGTGGGCGGTGCTGGTGTCGTGCTG
GTGCCTCCTACTCCTCGGAATCCGTCGTCTTTGAGCCGGGTGCACGTCAC
ACCTTCGCCGAAGCCGTGGGCCAGAACGTGCTAATCCCACTGCCATGCTG
CTCTTGCGGGCGTGAGCTGTTGCGCACATCAACTTGCCCACTACGGCGAA
ATCATCCAGAATGCCATCACAAGGTGCTGACCGATGCCAAGGTGCGTACT
AGGAATCTGGGCGACATTCAACACAGAACT
UFO02744.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6439-RB | 1625 | CG6439-RB | 350..1409 | 9..1063 | 4965 | 98.4 | Plus |
| CG6439-RA | 1861 | CG6439-RA | 152..1211 | 9..1063 | 4965 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22017340..22017941 | 889..290 | 2835 | 98.8 | Minus |
| 3R | 32079331 | 3R | 22017979..22018098 | 309..190 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 22018619..22018717 | 196..98 | 480 | 99 | Minus |
| 3R | 32079331 | 3R | 22017041..22017219 | 1063..888 | 455 | 90 | Minus |
| 3R | 32079331 | 3R | 22018779..22018829 | 99..49 | 255 | 100 | Minus |
| 3R | 32079331 | 3R | 22018991..22019033 | 51..9 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:05:44 has no hits.
UFO02744.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:33 Download gff for
UFO02744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-RA | 343..1419 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:14 Download gff for
UFO02744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-RA | 145..1221 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:30 Download gff for
UFO02744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6439-RA | 145..1221 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:30 Download gff for
UFO02744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22017341..22017922 | 309..888 | 99 | <- | Minus |
| 3R | 22017980..22018096 | 192..308 | 100 | <- | Minus |
| 3R | 22018624..22018716 | 99..191 | 100 | <- | Minus |
| 3R | 22018780..22018827 | 51..98 | 100 | <- | Minus |
| 3R | 22018992..22019039 | 1..50 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:14 Download gff for
UFO02744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17843063..17843644 | 309..888 | 99 | <- | Minus |
| arm_3R | 17843702..17843818 | 192..308 | 100 | <- | Minus |
| arm_3R | 17844346..17844438 | 99..191 | 100 | <- | Minus |
| arm_3R | 17844502..17844549 | 51..98 | 100 | <- | Minus |
| arm_3R | 17844714..17844761 | 1..50 | 92 | | Minus |
