UFO02746.5prime Sequence
736 bp (705 high quality bases) assembled on 2009-01-14
> UFO02746.5prime
CAGTCGACATGTCTTATTTCGCAGATCCCAACCAGCAGTACAACTATGGC
GGCGGTAATCCCCCGCAGGGAGGATATGGTGGATATCCACCTCAGGGCGG
CTATCCACCTCAAGGACCGCCGCAAGGCTACCCACCCTATGCACAAGGAG
GTGCTCAACCCTATCCACAGCCCTACGGACAGGGGCCTCCACCGGGAGGT
TATGCTCCCCAGCCGGGATTTATCCAACCACCACCATCTGCTGGCGGCTA
CGGAGCCTACGATGATCCGGAGAGCCAGCCCAAGAACTTCTCGTTTGACG
ACCAAAGCATCCGTCGCGGATTCATACGTAAGGTGTACCTGATTCTAATG
GGACAACTAATCGTCACTTTTGGAGCTGTTGCCCTGTTTGTATACCACGA
GGGCACTAAAACCTTTGCCAGGAATAACATGTGGCTCTTTTGGGTTGCCC
TCGGCGTAATGTTAGTAACCATGCTGTCTATGGCTTGCTGCGAAAGTGTG
CGCCGCCAAACACCGACGAACTTCATATTCTTGGGTCTGTTTACAGCAGC
TCAGTCGTTCTTAATGGGAGTTTCCGCAACCAAAATATGCTCCGAAAGAG
GTTCTCATGGCGGTGGGCATAACAGCAGCGGTTGCTTTGGCCCTAACGAT
CTTCGCCTTGCAGACAAAGTACGACTTTACTATGATGGGCGGTTTTTGAT
CGCCTGCATTGGAGTGTTCCTGATCTTCGGCATATG
UFO02746.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmda1-RI | 1592 | CG3798-RI | 77..805 | 5..733 | 3495 | 98.9 | Plus |
| Nmda1-RF | 2118 | CG3798-RF | 603..1331 | 5..733 | 3495 | 98.9 | Plus |
| Nmda1-RH | 1634 | CG3798-RH | 137..847 | 23..733 | 3420 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12878384..12878730 | 351..5 | 1720 | 99.7 | Minus |
| 2R | 25286936 | 2R | 12878071..12878322 | 602..350 | 1215 | 99.6 | Minus |
| 2R | 25286936 | 2R | 12877881..12878016 | 733..599 | 540 | 94.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:12:21 has no hits.
UFO02746.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:42 Download gff for
UFO02746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RF | 624..1358 | 1..736 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:04 Download gff for
UFO02746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RF | 599..1333 | 1..736 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:12 Download gff for
UFO02746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RF | 599..1333 | 1..736 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:12 Download gff for
UFO02746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12877877..12878014 | 601..736 | 94 | <- | Minus |
| 2R | 12878073..12878321 | 351..600 | 99 | <- | Minus |
| 2R | 12878385..12878731 | 1..350 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:04 Download gff for
UFO02746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8765382..8765519 | 601..736 | 94 | <- | Minus |
| arm_2R | 8765578..8765826 | 351..600 | 99 | <- | Minus |
| arm_2R | 8765890..8766236 | 1..350 | 98 | | Minus |
