UFO02747.5prime Sequence
607 bp (566 high quality bases) assembled on 2009-01-14
> UFO02747.5prime
CAGTCGACATGGAGCTGCTGCAGGCCCTCTGCTGTACGCTGCTCCTGCTT
TTGGCCCGGATGCAAGTTCTGCTTGCCGTCAGTTGGGAGGATTGGTGGAC
ATACGATGGCATCTCAGGACCTGCCTTTTGGGGCCTCATCAATCCGGAGT
GGTCGCTCTGCAACAAGGGTCGTCGCCAATCGCCGGTCAATCTGGAACCC
CAACGCCTGCTATTTGATCCCAACTTGAGGCCCATGCACATAGACAAGCA
CAGGATATCCGGATTGATCACTAATACGGGCCACAGCGTCATCTTTACGG
CCGGCAATGATACGGTGGCCAACTACGACGGTATGCAGACGCCAGTGAAT
ATATCGGGCGGACCGTTGTCGTATCGCTACCGTTTTCCACGAGAATCCAC
ATGCACTACGGATTGAACGACCAATTTGGATCGGAGCACAGTGTCGAGGG
CTATACGTTCCCGGTGGAGATACAAATATTCGGCTACAATTCCCAGCTGT
ATGCAAATTTTCTCAGATGCCCTCATCCGCGCCCAGGGCATCGTCAGTGT
CACCATTCTGCTGCAAGCTGGAGAATCTCTCGAAAGCGGAGCTGCTCATG
CTACACG
UFO02747.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32698-RD | 1775 | CG32698-RD | 489..1078 | 9..602 | 2720 | 97.8 | Plus |
| CG32698-RB | 2007 | CG32698-RB | 721..1310 | 9..602 | 2720 | 97.8 | Plus |
| CG32698-RC | 8207 | CG32698-RC | 698..1287 | 9..602 | 2720 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9836593..9836806 | 254..469 | 965 | 98.6 | Plus |
| X | 23542271 | X | 9836310..9836450 | 114..254 | 705 | 100 | Plus |
| X | 23542271 | X | 9845699..9845795 | 468..565 | 380 | 94.9 | Plus |
| X | 23542271 | X | 9812099..9812156 | 9..66 | 290 | 100 | Plus |
| X | 23542271 | X | 9832490..9832543 | 65..118 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:26:02 has no hits.
UFO02747.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:41 Download gff for
UFO02747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32698-RA | 460..1052 | 9..607 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:06 Download gff for
UFO02747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32698-RA | 476..1068 | 9..607 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:28 Download gff for
UFO02747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32698-RC | 698..1290 | 9..607 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:28 Download gff for
UFO02747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9836594..9836806 | 255..469 | 98 | -> | Plus |
| X | 9845701..9845796 | 470..567 | 93 | -> | Plus |
| X | 9812099..9812156 | 9..66 | 100 | -> | Plus |
| X | 9832492..9832542 | 67..117 | 100 | -> | Plus |
| X | 9836314..9836450 | 118..254 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:06 Download gff for
UFO02747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9706132..9706189 | 9..66 | 100 | -> | Plus |
| arm_X | 9726525..9726575 | 67..117 | 100 | -> | Plus |
| arm_X | 9730347..9730483 | 118..254 | 100 | -> | Plus |
| arm_X | 9730627..9730839 | 255..469 | 98 | -> | Plus |
| arm_X | 9739734..9739829 | 470..567 | 93 | -> | Plus |
