UFO02748.5prime Sequence
860 bp (770 high quality bases) assembled on 2009-01-14
> UFO02748.5prime
CAGTCGACATGTTGTGGGAGTTCTTCGCCCTATTTGCGATCGCTGCCGCC
TTGTTCTACCGTTGGGCGTCCGCCAACAATGATTTCTTCAAGGATAGGGG
CATCGCCTATGAAAAGCCAGTGCTCTACTTTGGCAACATGGCCGGCATGT
TCCTGCGGAAGAGGGCCATGTTTGACATAGTCTGTGATCTCTACACCAAA
GGCGGAAGTAAGAAATTTTTTGGTATCTTTGAGCAGCGACAACCACTTTT
AATGGTGCGCGACCCAGATCTTATCAAGCAGATAACCATAAAGGACTTCG
ATCACTTTATCAATCATCGCAATGTGTTTGCCACCAGCAGCGATGATGAT
CCACATGACATGAGTAACCTTTTCGGCAGCTCGCTGTTCTCCATGCGAGA
TGCTCGGTGGAAGGATATGCGAAGCACTCTGAGTCCGGCATTTACAGGCA
GCAAAATGCGTCAGATGTTCCAGCTGATGAACCAGGTGGCCAAGGAGGCC
GTGGACTGTCTTAAGCAGGATGATTCAAGGGTTCAGGAGAATGAACTGGA
CATGAAAGGACTACTGCACACGATTCACCAATGATGTGATCGCCTCGACA
GCCTTTGGACTGCAAGTGAACTCGTTCAAGGATCGCGAAAATACCTTCTA
TCAGATGGGAAAAAAGCTGACCACATTTACATTCCTGCAGAGCATGAGTT
CATGTTGTTCTTCGCATTGAAGGGTTTTAATAAGATCCTTAAGTCGAGCT
TTTCGAATAGGAAAGCACTCAGTTATTCGTGCGTCTGTGCCTCGATGCCT
TGAAATACCGACAAGAGCAAAAATTTGTACGTCCCCGAAATGAAAAACAT
GCCTGATGAG
UFO02748.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp9f2-RA | 1758 | CG11466-RA | 115..969 | 3..858 | 3895 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12404370..12404889 | 734..215 | 2490 | 99.4 | Minus |
| 3R | 32079331 | 3R | 12397334..12397853 | 734..215 | 2280 | 96.7 | Minus |
| 3R | 32079331 | 3R | 12405703..12405914 | 214..3 | 1045 | 99.5 | Minus |
| 3R | 32079331 | 3R | 12398675..12398877 | 209..7 | 880 | 95.6 | Minus |
| 3R | 32079331 | 3R | 12404191..12404310 | 852..733 | 250 | 84.3 | Minus |
| 3R | 32079331 | 3R | 12397148..12397268 | 852..732 | 240 | 83.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:32:19 has no hits.
UFO02748.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:40 Download gff for
UFO02748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9f2-RA | 172..1009 | 1..838 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:35 Download gff for
UFO02748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9f2-RA | 113..950 | 1..838 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:32 Download gff for
UFO02748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9f2-RA | 113..950 | 1..838 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:32 Download gff for
UFO02748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12404370..12404889 | 215..734 | 99 | <- | Minus |
| 3R | 12405703..12405914 | 1..214 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:35 Download gff for
UFO02748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8230092..8230611 | 215..734 | 99 | <- | Minus |
| arm_3R | 8231425..8231636 | 1..214 | 98 | | Minus |
