UFO02750.5prime Sequence
929 bp (808 high quality bases) assembled on 2009-01-14
> UFO02750.5prime
CAGTCGACATGACACATCAGGGCATCGGCTGCCTGGTCAAGTGGTTATAT
CTGGTGCTGATCGTGCACACGCTCCTCTGCATCGGCCAGCTCGAGTGTCG
CCAGCAGCACCACAATCGGAATAACAATAATAATAACAGAAGAGCGGACT
CGTCCAGCTCAGAGGAGGGCCACGGCAACACCAGCGATGGCCTGGACAAC
TTCGCAGATCAGGACGCCAGCTTCGTTGGCCATGGACACCAGCCGCGTCG
GGGTCAACGAAAGAAACAGCAGGGAGGTGGAGGAGGAGGCAGCGGCGGCG
GCGGCGGAAACGGAGGAGGCGGTGGAAGCCGGCACAATCGCAACGAGGAG
AGCGGCATCTCGTTGTGGATCAATGAGCAGCAGCTCAAAATGCTTACAGC
GCTCTACTTCCCACAGGGCTACTCGGAGCGCCTGTACGCCATTCACAACA
GCCGGGTGACCAATGATCTGAGGGACACGACGCTGTACAACTTCCTGGTA
ATCCCATCGGAGGTCAACTACGTTAACTTCACATGGAAGTCGGGGCGCCG
CAAATACTTCTACGACTTTGACCGCCTGCAGACCATGGATGAAAGTATCT
TGAAGGCGCCAACGCTGTCCATTCGCAAGAGCGGACGCATTCCGCAGAGC
AGAAAAATTTTAGCATATTCCTGCCCTGCACCGGCAACAGCTCCGGCACC
GCGTCCTTCAACGTCGGCCTCAGATCCAGACGCGCCACAACAAGCCGCTC
TCGGGCACAACCCATTCCGCCTCAACTTCAAAAAGAATGCGCCACAGAGG
TGTGTATGATATAGAACGCTTCAACCCTACTTCCTAACACTTTGCAAGAA
TGCAGCTTGAAGTGCCGGCAGGAACGGGTACTGCAACGAGCACCCACATC
TTGCAAGGGCACGTGGGCTCAACGGTCAT
UFO02750.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shf-RA | 1784 | CG3135-RA | 261..1173 | 9..919 | 4215 | 98.3 | Plus |
| shf-RB | 1796 | CG3135-RB | 261..1185 | 9..919 | 4085 | 97 | Plus |
| shf-RD | 1745 | CG3135-RD | 261..1053 | 9..799 | 3825 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6774561..6774951 | 399..9 | 1955 | 100 | Minus |
| X | 23542271 | X | 6774193..6774444 | 647..396 | 1260 | 100 | Minus |
| X | 23542271 | X | 6773932..6774109 | 833..657 | 575 | 94.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:50:28 has no hits.
UFO02750.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:27 Download gff for
UFO02750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-RA | 261..1179 | 9..925 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:08 Download gff for
UFO02750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-RA | 261..1179 | 9..925 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:07 Download gff for
UFO02750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shf-RA | 261..1179 | 9..925 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:07 Download gff for
UFO02750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6773915..6774109 | 657..848 | 95 | <- | Minus |
| X | 6774183..6774440 | 400..656 | 99 | <- | Minus |
| X | 6774561..6774951 | 9..399 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:08 Download gff for
UFO02750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6668594..6668984 | 9..399 | 100 | | Minus |
| arm_X | 6667948..6668142 | 657..848 | 95 | <- | Minus |
| arm_X | 6668216..6668473 | 400..656 | 99 | <- | Minus |
