UFO02754.5prime Sequence
1086 bp (962 high quality bases) assembled on 2009-01-14
> UFO02754.5prime
CAGTCGACATGAGTGCCCTCATATTTCTGTGCGCGATTCTAATTGGTTTC
GTGATTTATTCACTCATCAGCTCGGCGCGGCGTCCCAAGAACTTTCCACC
AGGACCTCGATTTGTGCCATGGTTAGGAAACACATTACAGTTCCGTAAGG
AAGCTAGTGCTGTTGGCGGCCAGCACATCCTGTTCGAGCGCTGGGCAAAA
GACTTCCGGAGCGACCTGGTGGGTCTGAAGCTGGGCCGCGAATATGTGGT
GGTTGCCCTTGGCCACGAGATGGTGAAGGAAGTGCAGCTGCAGGAGGTGT
TCGAGGGGCGACCAGATAACTTCTTTCTGCGTCTGCGAACCATGGGAACC
CGCAAGGGCATCACCTGTACGGACGGACAGCTTTGGTACGAGCACCGACA
TTTTGCCATGAAGCAGATGCGCAACGTGGGCTACGGACGCAGCCAGATGG
AGCATCACATCGAACTGGAGGCGGAAGAGCTGCTGGGGCAGCTGGAGCGC
ACCGAGGAGCAGCCGATCGAGCCGGTCACTTGGCTGGCGCAGAGTGTACT
CAATGTACTGTGGTGTCTGATAGCTGGAAAGAGGATCGCCAGACAGGAGG
ATGGGACGTTGCGGCGTCTGCTCGACCTGATGAATCGGCGTTCCAAACTC
TTTGACATCTGCGGTGGTCTGCTGGCCCAGTTTCCCTGGCTGCGCCACGT
GGCCCCCGATCGCACTGGCTACAATCTCATCCAGCAACTGAACACAGAGC
TGTACGGTTTCTTTATGGACACCATCGAGGAGCACCGACGGCAGCTGGCG
AAAGATCCGTCGCCGGCGGAAAGCGATCTCATCTATGCCTACCTCCAGGA
GATGAAGGACCGCAGTGCTGGCGGCGAGAGCAGCACATTCAATGAGACGC
AGCTGTGATGACATCTGACTTCTTCATGCAGCTCCAGACCACTAGCAATA
CGATCACTGACTATGTACTTGCTATGCCCCGATGTGCAGAAAGCTGTTCA
GCATGACGCAGCTGCTGCTGCAGACAAATGCTTCATACATGACGTCGAGC
TGGACTACTGAATGCTTCACATGGAGGTGAGGCTTC
UFO02754.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp305a1-RA | 1801 | CG8733-RA | 138..1148 | 9..1002 | 4620 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19811170..19811937 | 905..138 | 3825 | 99.9 | Minus |
| 3L | 28110227 | 3L | 19813108..19813202 | 103..9 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 19812170..19812210 | 140..100 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:09 has no hits.
UFO02754.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:26 Download gff for
UFO02754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 115..1132 | 1..1002 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:55 Download gff for
UFO02754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 131..1148 | 1..1002 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:27 Download gff for
UFO02754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 131..1148 | 1..1002 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:27 Download gff for
UFO02754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19811056..19811934 | 141..1002 | 97 | <- | Minus |
| 3L | 19812170..19812207 | 103..140 | 100 | <- | Minus |
| 3L | 19813109..19813208 | 1..102 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:55 Download gff for
UFO02754.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19804156..19805034 | 141..1002 | 97 | <- | Minus |
| arm_3L | 19805270..19805307 | 103..140 | 100 | <- | Minus |
| arm_3L | 19806209..19806308 | 1..102 | 96 | | Minus |
