UFO02759.5prime Sequence
784 bp (662 high quality bases) assembled on 2009-01-14
> UFO02759.5prime
CAGTCGACATGACCTTGCCCACAAACACACACGCATCTGCAAACGACGGC
GGCAGCGGCAACAACAACCACAGCAATATCAGCAGTAACAACAGCAGCAG
CAGCGACGAAGACTCAGACATGTTTGGACCACCCCGCTGCTCCCCGCCCA
TCGGCTATCACCATCACCGTTCCCGTGTGCCCATGATCTCGCCAAAGCTG
CGGCAGCGCGAGGAGCGCAAGCGGATCCTCCAGCTCTGCGCCCACAAGAT
GGAGAGGATCAAGGACTCGGAGGCGAACCTGCGGCGCAGCGTCTGCATCA
ACAACACCTACTGCCGCCTGAATGACGAACTGCGGCGCGAGAAGCAGATG
CGCTACCTCCAGAATCTGCCCAGAACCAGCGACAGCGGCGCAAGCACCGA
ACTGGCGCGTGAGAATCTCTTCCAGCCGAACATGGACGACGCCAAGCCGG
CCGGCAATAGCACTAGCAATAATATCAACGCCAACGGCAGCCTTCATCCT
CTTTTGGCGATGCCTTTGGCTCCTCAACGGATCATCGTCGGTCGCGGCGG
AATTTGCTCCCTGGAGAATCAACCGCCCGAGCGTCAGCAGTTGGGGACGC
CCGCTGTTGCCTCCGCTCCCGGAGCGGCAATTCGCGCCCTTTCCGTTTCG
GGCTCGGCATCGACGCGTGAATAACCGAAACGCCACTGTCAGCTGCACTG
GTCACGTCTGGTAATCTGTATGGAGCTGACCCCACTAAGGACCCCATGTG
CCAATCGTCAGAAATTACCCAAGGAGCCGAAACT
UFO02759.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2865-RB | 5515 | CG2865-RB | 664..1458 | 9..781 | 3235 | 95.5 | Plus |
| CG2865-RA | 2079 | CG2865-RA | 723..1517 | 9..781 | 3235 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2292325..2292689 | 373..9 | 1825 | 100 | Minus |
| X | 23542271 | X | 2282203..2282520 | 680..371 | 1185 | 95.9 | Minus |
Blast to na_te.dros performed 2014-11-28 19:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6860 | 19..107 | 207 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2430 | 19..113 | 202 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6809 | 20..104 | 199 | 74.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2382 | 29..107 | 193 | 72.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2424..2527 | 19..120 | 191 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6788 | 42..104 | 189 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6887 | 33..107 | 182 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2358 | 51..104 | 180 | 81.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1077..1139 | 42..104 | 180 | 76.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2475 | 34..113 | 172 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6821 | 19..104 | 164 | 68.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1168 | 52..123 | 164 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1482..1571 | 24..109 | 162 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1501..1587 | 12..101 | 162 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2788..2856 | 42..107 | 158 | 72.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1126 | 22..109 | 158 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2773..2832 | 42..101 | 156 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2439 | 50..107 | 155 | 74.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2602..2666 | 42..109 | 153 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6767 | 59..104 | 149 | 80.4 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 972..1040 | 59..128 | 149 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2789..2856 | 33..101 | 144 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2733..2823 | 20..107 | 141 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..6920 | 22..107 | 141 | 66.3 | Plus |
| TART-A | 13424 | TART-A 13424bp | 911..1003 | 78..174 | 141 | 64.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12089..12181 | 78..174 | 141 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2581..2648 | 44..109 | 137 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2346 | 73..113 | 124 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2897..2938 | 58..99 | 120 | 76.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1093 | 71..103 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6746 | 76..104 | 118 | 89.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 122..199 | 34..106 | 116 | 66.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9152..9229 | 34..106 | 116 | 66.7 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 530..615 | 58..143 | 114 | 62.1 | Plus |
| BS | 5142 | BS BS 5142bp | 2018..2114 | 22..113 | 114 | 61.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 122..176 | 53..101 | 108 | 72.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9152..9206 | 53..101 | 108 | 72.7 | Plus |
UFO02759.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:29 Download gff for
UFO02759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2865-RA | 52..737 | 1..680 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:11 Download gff for
UFO02759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2865-RA | 717..1402 | 1..680 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:28 Download gff for
UFO02759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2865-RA | 717..1402 | 1..680 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:28 Download gff for
UFO02759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2282203..2282517 | 374..680 | 96 | <- | Minus |
| X | 2292325..2292693 | 1..373 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:11 Download gff for
UFO02759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2176236..2176550 | 374..680 | 96 | <- | Minus |
| arm_X | 2186358..2186726 | 1..373 | 98 | | Minus |
