UFO02764.5prime Sequence
976 bp (862 high quality bases) assembled on 2009-01-14
> UFO02764.5prime
CAGTCGACATGGCCAAGGACGAGGAGGATGATCTGCTGCCCGACAAGGAT
GCGGCCAAGGGCTTCTATGCCAAATACGAGCCCAAGGAGATTCTGGGCAG
GGGCATCAGTTCGACCGTGAGGCGATGTATCGAAAAGGAGACGGGCAAGG
AGTTTGCCGCCAAGATCATCGACTTGGGCGCCACCACAGAGTCAGGCGAG
ACGAATCCATATCACATGCTGGAAGCAACCAGACAAGAAATCTCAATACT
GCGCCAGGTCATGGGGCATCCCTACATAATTGATCTGCAGGATGTGTTCG
AGTCAGATGCATTTGTTTTCCTCGTCTTCGAGCTGTGTCCCAAAGGTGAA
CTCTTCGACTATCTGACCTCTGTGGTGACGCTATCCGAGAAGAAGACGCG
CACCATTATGCGACAAATCTTTGAGGGCGTCGAGTACATACACGCGAAGA
GCATTGTCCATCGGGATCTTAAGCCCGAGAATATCTTGCTGGACGAGAAC
CACAACGTTAAGATCACGGATTTTGGCTTCGCCAAGCAGTTGCAAGAGGG
CGAGAAACTTACAAATCTGTGCGGAACGCCGGGTTATTTGGCTCCCGAAA
CGCTCAAGTGCAACATGTTCGAGGGATCCCCCGGCTACTCGCAGGAAGTC
GACATATGGGCCTGTGGCGTGATTATGTTTACGCTGCTCGTCGGTTGTCC
ACCTTTCTGGCACCGCAAGCAGATGGTCATGCTGCGGAATATCATGGAGG
CAAGTACAGCTTCACCCTCGCGGAGTGGGCTGATATTTCAGAGGATCCAA
GGATCTGATACGCAAATGTCTAGTCGTTGATCCTTCGCAACGTATAAACC
GTCAAGGAAGTATTAGACATCATTTTCAACCAATGCTGTTCGAGCAAAAA
CATGATGGCCTCAAGCGCAGCCTTGTGAACAAAGTCGACGAATAGATCGC
ATCACTTGAAATCGCATGCTGCGCAA
UFO02764.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PhKgamma-RH | 2522 | CG1830-RH | 512..1485 | 9..976 | 4400 | 97.8 | Plus |
| PhKgamma-RB | 2421 | CG1830-RB | 411..1384 | 9..976 | 4400 | 97.8 | Plus |
| PhKgamma-RF | 2232 | CG1830-RF | 306..1190 | 9..888 | 4210 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11697311..11697595 | 280..564 | 1425 | 100 | Plus |
| X | 23542271 | X | 11697063..11697244 | 98..279 | 910 | 100 | Plus |
| X | 23542271 | X | 11698299..11698435 | 656..791 | 575 | 96.4 | Plus |
| X | 23542271 | X | 11696449..11696541 | 9..101 | 465 | 100 | Plus |
| X | 23542271 | X | 11697661..11697751 | 565..655 | 455 | 100 | Plus |
| X | 23542271 | X | 11698506..11698573 | 797..865 | 295 | 98.6 | Plus |
Blast to na_te.dros performed 2014-11-28 20:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Helena | 1317 | Helena HEL 1317bp | 923..968 | 355..310 | 113 | 71.7 | Minus |
UFO02764.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:21 Download gff for
UFO02764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PhKgamma-RB | 410..1348 | 1..936 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:51 Download gff for
UFO02764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PhKgamma-RB | 404..1342 | 1..936 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:23 Download gff for
UFO02764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PhKgamma-RB | 404..1342 | 1..936 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:23 Download gff for
UFO02764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11698500..11698597 | 792..885 | 93 | -> | Plus |
| X | 11696442..11696540 | 1..100 | 96 | -> | Plus |
| X | 11697066..11697244 | 101..279 | 100 | -> | Plus |
| X | 11697311..11697595 | 280..564 | 100 | -> | Plus |
| X | 11697661..11697751 | 565..655 | 100 | -> | Plus |
| X | 11698299..11698435 | 656..791 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:51 Download gff for
UFO02764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11591344..11591628 | 280..564 | 100 | -> | Plus |
| arm_X | 11591694..11591784 | 565..655 | 100 | -> | Plus |
| arm_X | 11590475..11590573 | 1..100 | 96 | -> | Plus |
| arm_X | 11592332..11592468 | 656..791 | 97 | -> | Plus |
| arm_X | 11592533..11592630 | 792..885 | 93 | -> | Plus |
| arm_X | 11591099..11591277 | 101..279 | 100 | -> | Plus |
