UFO02768.5prime Sequence
1109 bp (992 high quality bases) assembled on 2009-01-14
> UFO02768.5prime
CAGTCGACATGGCTGCAATTGTGCGATTTAATTTGTTAACAAAGCCGCAG
ATTGTTGCGACTTTGCCGGCCAGCCTGCATGTGCAGCGCTTCCAGAGCAC
CCAGGCCCCACCTCCGGGCACTCCTCCGCCACAGACGAAGACCAAATTCG
GTCCGCTGGCGGACGAAGATCGCATCTTCACCAACCTCTATGGACGACAT
GACTGGAGGCTGAAGGGAGCTTTGAAGCGCGGCGACTGGTACAAAACCAA
GGAGATTGTGCTGAAGGGGGCTGACTGGATCGTTAACGAGATCAAGACGT
CCGGCCTGCGCGGACGTGGAGGAGCTGGCTTCCCCAGCGGTATGAAGTGG
TCCTTCATGAACAAGCCCGGAGATGGACGCCCCAAGTACTTGGTGGTGAA
TGCCGATGAGGGAGAGCCTGGCACCTGCAAGGATCGCGAGATCATGCGCC
ACGATCCACACAAGCTGGTGGAGGGCTGTCTGATTGCCGGACGCGCCATG
GGCGCCCAGGCTGCCTACATCTACATTCGTGGCGAGTTCTACAACGAGGC
TTCCAACATGCAACTGGCCATTGCCGAGGCATACCAGGCTGGTCTGATTG
GAAAGAATGCGTGCGGAACTGGCTACGACTTCGACGTCTTCATGCACCGC
GGCGCTGGAGCTTACATTTGCGGCGAGGAGACCGCTCTGATCGAATCGCT
GGAAGGAAAGCAGGAAAGCCACGCTTGAAGCCGCCATTCCCAGCTGATGT
GGGTGTGTTCGGTTGCCCAACCACAGTTACCAATGTGGAGACCGTGGCCG
TTGCACCAACCATTTGCCGTCGTGGCGGTGTATGGTTCGCCAGCTTCGGT
CGCACCCGTAACTCGGGCACCAAGCTCTTCAACATTTCGGACATGTCAAC
AGGCCCTGCACTGTGGAGGAGGAAATGTCCATCCCACTCAGGAGTTGATT
GAGCGCCACTGCGGAGCGTCACTGGTGGATGGGATATCTTGCTAGGCGTC
AATTCCCGGCGGCTCTTCCAACCCATCATACCAAAATGTCTGCAACGAAT
GTTTATCAAGGGAACTCGATGCCTATTGCGCTCAACTTCGCTGGGAACTG
GCGCTTTAC
UFO02768.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9140-RB | 1553 | CG9140-RB | 34..1132 | 9..1100 | 4970 | 97.6 | Plus |
| CG9140-RA | 1590 | CG9140-RA | 71..1169 | 9..1100 | 4970 | 97.6 | Plus |
| CG11423-RA | 2143 | CG11423-RA | 741..1571 | 108..936 | 960 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6061379..6062022 | 1048..411 | 2755 | 97.7 | Minus |
| 2L | 23513712 | 2L | 6062074..6062436 | 416..54 | 1785 | 99.4 | Minus |
| 2R | 25286936 | 2R | 17596007..17596837 | 108..936 | 905 | 74.5 | Plus |
| 2L | 23513712 | 2L | 6062642..6062687 | 54..9 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:47 has no hits.
UFO02768.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:20 Download gff for
UFO02768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9140-RA | 71..1124 | 9..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:57 Download gff for
UFO02768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9140-RA | 71..1124 | 9..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:06 Download gff for
UFO02768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9140-RA | 71..1124 | 9..1058 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:06 Download gff for
UFO02768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6061390..6062021 | 412..1037 | 97 | <- | Minus |
| 2L | 6062079..6062435 | 55..411 | 99 | <- | Minus |
| 2L | 6062642..6062687 | 9..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:57 Download gff for
UFO02768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6061390..6062021 | 412..1037 | 97 | <- | Minus |
| arm_2L | 6062079..6062435 | 55..411 | 99 | <- | Minus |
| arm_2L | 6062642..6062687 | 9..54 | 100 | | Minus |
