UFO02769.5prime Sequence
915 bp (758 high quality bases) assembled on 2009-01-14
> UFO02769.5prime
CAGTCGACATGTGCCGGGCTCCCATTGCGTCACTCGACTGTATGGAGGAG
TTCAGTGGTACGGGCGGTCATCTTGATTTCGGTCGTTCGATCAGTTTGGG
CTCCAATCCGGCGCTACCATTGCGCCATGGATCCACACCAACGCCGGGAC
TGCGGTACAAGAATCTGGGCAAAAGCGGGTTGCGTATCTCGAATGTGGGA
TTGGGTACCTGGCCGGTATTTTCGCCGGGCGTGAGCGATGACCAGGCGGA
GGCAATCCTTAAGCTGGCCATCGAGAGCGGTATCAATCTGTTCGACATCT
CGGAGGCGCACTCGGAGACGGAGATCGGCAAGATACTGCAGCGGGCGGGC
TGGAAGAGGACCGCCTATGTCATCACCACGAAGGTCTACTGGAGCACCAA
GTCGGAGGAACGTGGTCTCTCCCGGAAACACATCATCGAATGTGTTCGTG
CCAGTTTGCAGCGATTGCAGCTGCAGTACATCGATATCGTCATCATCCAC
AAGGCGGATCCCATGTGTCCCATGGAGGTGGTGCGCGCCATGAGCTACGT
GATACAGCAGGGCTGGGCTATGTATTGGGGCACCGCTCGATGGAGCCAGG
TGGAGATCATGGAGGCCTATACCAACTGCCCGCCAGTTCAACTGCATCAC
GCCCATTGTGAGCAGTCCGAGTACCATTATGGTTCTGTCGCGAAAGTGCG
AACTTCTTACCTGGCCGGAGATGTACAACAAGGATCGGAGTGGGGCCTCA
TGGCCTGGGTCCACCTCTCGATGCCCTCAGCGACCCCAGATGGGACAAGC
TTTTCCTGCCCAGGGCTCCTTCAGACGAAAAGCTTCTGTGGAACCGAGAG
ACGAATCAATCTAATGCCGCTCTGTCCCCCCAGGCAATTGGGAAAGGACG
GATCATAAGGGGGCC
UFO02769.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hk-RG | 7021 | CG43388-RG | 1156..2065 | 8..912 | 3825 | 96.3 | Plus |
| Hk-RF | 3788 | CG43388-RF | 1411..2320 | 8..912 | 3825 | 96.3 | Plus |
| Hk-RD | 4046 | CG43388-RD | 1669..2578 | 8..912 | 3825 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10241416..10241737 | 402..81 | 1610 | 100 | Minus |
| X | 23542271 | X | 10240710..10241019 | 837..528 | 745 | 91.8 | Minus |
| X | 23542271 | X | 10241114..10241241 | 528..401 | 640 | 100 | Minus |
| X | 23542271 | X | 10242808..10242884 | 83..7 | 370 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:24:00 has no hits.
UFO02769.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:19 Download gff for
UFO02769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hk-RB | 292..1186 | 1..892 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:38 Download gff for
UFO02769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hk-RF | 1403..2297 | 1..892 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:51 Download gff for
UFO02769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hk-RD | 1661..2555 | 1..892 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:51 Download gff for
UFO02769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10241114..10241241 | 401..528 | 100 | <- | Minus |
| X | 10241418..10241736 | 82..400 | 100 | <- | Minus |
| X | 10242810..10242888 | 1..81 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:38 Download gff for
UFO02769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10135147..10135274 | 401..528 | 100 | <- | Minus |
| arm_X | 10135451..10135769 | 82..400 | 100 | <- | Minus |
| arm_X | 10136843..10136921 | 1..81 | 93 | | Minus |
