UFO02771.5prime Sequence
1101 bp (964 high quality bases) assembled on 2009-01-14
> UFO02771.5prime
CAGTCGACATGGATTACATTGTGAAGGCCTACAAGGATTGGAAACTGCAT
TCGCAGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAATTCATGTT
CAACGAGAAGCAATCGATCCGGGACTCCGGGCGCACCCTCAAGCGCTACG
GGAGCACCTGCTGCAACAGCCTCCGGAACAATGAGACCCTCATCCGGCAC
ATCGTCGAGAAGACGGACACGCTGCAGGGCATCGCCCTCAAGTACGGCTG
CACGACGGAGCAAATAAGACGGGCCAACCGCCTCTTCGCCTCGGACAGCC
TGTTCCTGCGTCAGTTTCTCCTCGTTCCAGTGGAGAAGAACTCACCGTAC
TATCCCCAGGTGCCTGGCGATTCGATAGCCGCTTTCGACGCCGTGCTGGC
CACGCCACCGGGCACTCCGGATGCCAATGGACAGCGGGAGGCGCACAACA
ATGCCAATAATCTGAGCCAGAGCAACAAGAGCTTCATGAAGAGCAACGAC
ATCAGCAGCAGCAGTAGCAGCAGCAGCAGTGGGAGCAGCAGCAGCTGCAA
CACAAGTGGCACCGGCCCCATTTCCGGAGGATCGCGTTCCGGCGGCAACC
AACAGCAGCAGCAGCAACAGCCCCCACAACGTCCCTACTCCATTGCCGGG
GAGCTGCTGGTGGTGCAGCCGGCGACGAGGATCCATCGATGATGCACGGC
CACGGTGGTTGCAGCGGCAAGCAGAGCAAGAGCCTGGACTCGGTGGCCGC
AATGACGCCCGAGGAGGAGAACAGGAAATGCATGAACGACTTCCTTAACA
AGATAGACAACAACCATTTCTGAGTCGCGCAAATATGTGGAGCGCTCTAA
GGACCTGTTCAGCAGTCAGAGTGATGCGGACATCTGCATCAGTGCCACCG
CCGACGTTTTCCCGCAGCGCCGCATCCGCTGAACACTCCTACAGACCAAC
CACAACGACGGTCCGTCGCAGTATCAGCGCCACAGCTCGACGGCAGCGGA
ACTCCTCCGGATACGCGACCTTGCTGAACCCGAAGCCGACGCAACGAGTC
AGAATCCCTGAGGCTGGGAAAGCCACGAGACTACCTTCTTGATTGGCAGC
T
UFO02771.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12207-RG | 2535 | CG12207-RG | 642..1694 | 9..1055 | 4875 | 98.2 | Plus |
| CG12207-RF | 2113 | CG12207-RF | 220..1272 | 9..1055 | 4875 | 98.2 | Plus |
| CG12207-RC | 1997 | CG12207-RC | 104..1156 | 9..1055 | 4875 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14300419..14301018 | 254..853 | 2905 | 99.7 | Plus |
| 3R | 32079331 | 3R | 14298786..14298987 | 53..254 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 14301228..14301370 | 854..993 | 520 | 95.8 | Plus |
| 3R | 32079331 | 3R | 14290773..14290820 | 9..56 | 240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6899 | 465..630 | 319 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6893 | 467..630 | 275 | 66.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6956 | 445..612 | 220 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2449 | 487..642 | 216 | 63.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1157 | 534..633 | 165 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6824 | 515..630 | 161 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6414..6563 | 480..630 | 149 | 58.2 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 849..1005 | 464..630 | 146 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2450..2661 | 431..633 | 138 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2394 | 535..630 | 130 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6779 | 590..630 | 120 | 79.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6800 | 590..630 | 120 | 79.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2376 | 593..633 | 111 | 76.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6758 | 598..630 | 111 | 81.8 | Plus |
UFO02771.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:23 Download gff for
UFO02771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12207-RC | 59..1104 | 1..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:12 Download gff for
UFO02771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12207-RB | 415..1460 | 1..1042 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:38 Download gff for
UFO02771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12207-RC | 97..1142 | 1..1042 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:38 Download gff for
UFO02771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14290766..14290820 | 1..56 | 92 | -> | Plus |
| 3R | 14298790..14298987 | 57..254 | 100 | -> | Plus |
| 3R | 14300420..14301018 | 255..853 | 99 | -> | Plus |
| 3R | 14301228..14301370 | 854..993 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:12 Download gff for
UFO02771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10116488..10116542 | 1..56 | 92 | -> | Plus |
| arm_3R | 10124512..10124709 | 57..254 | 100 | -> | Plus |
| arm_3R | 10126142..10126740 | 255..853 | 99 | -> | Plus |
| arm_3R | 10126950..10127092 | 854..993 | 95 | == | Plus |
