UFO02773.5prime Sequence
856 bp (349 high quality bases) assembled on 2009-01-14
> UFO02773.5prime
CAGTCGACATGGGAGAAGTAAAACCCGCTAAAGTGGAAAACTATAGCACG
GGGACCGATGCAAACACTCTGTTCGTGGATGGGGAACGGGTTCTGTGCTT
CCTCGGACCGCTCATCTACGAGGCCAAGGTTCTGAAAACAAAACCCGATG
CGACGCCGGTTGAGTACTACATCCACTACGCGGGGTGGAGTAAAAACTGG
GACGAGTGGGTGCCCGAGAACCGAGTCCTCAAGTACAACGATGACGACGT
CAAGCGACGTCAGGAACTGGCTCGCCAGTGCGGCGAGCGCTCCAAGAAGG
ATAATAAGAAAGGCAGCGCCAAGGCCAAGAAAATGGAACAGATGCGGAAC
GAATCTCGTGCCTCGACGCCGTCTAAGGATAGCAACACCTCGCAATCGAC
CGCTAGCAGCACACCAACAACTAGCGCCGGACCGGGAAGCAAATCGGAAG
CCGGGAGCACTGGCACCACGACTACTAACAGCACCGCCAACTCTACAACC
AGCCGGGCCCACCGAAAGTCCACACAATCGACGCCATCCACAGCAAGACC
TGACACGCCGAGTGATAAAAAGGAAGACCCCGCCGCAGCTGAGACCACTG
AGGAAGAGGGGCCGGTGGCGCCGAAAAAGAAAAGAATGAGCGAACAACGG
CCTTCTCTTACTGTAGCGATGTAGCAGATAAGCCGTTGCCGCCCACTACC
ACTCCATCTACACCACCACGGAGCCGGCACCGTGTGTGGAAGCGAGGATG
CCTACGCAGCTAAGTGGAGGTCACGATTATGATACCCGACGAGTTAGGTA
CTATCTGACCGACGACTGTCTGCGGAGGTGCGGGAGCACAAACTGGTGGA
TCTGCC
UFO02773.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MRG15-RA | 1496 | CG6363-RA | 77..930 | 9..856 | 3865 | 97.3 | Plus |
| MRG15-RB | 1511 | CG6363-RB | 77..945 | 9..856 | 3705 | 95.6 | Plus |
| l(3)neo43-RC | 627 | CG14865-RC | 575..627 | 9..61 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15277006..15277557 | 856..311 | 2250 | 96.4 | Minus |
| 3R | 32079331 | 3R | 15277613..15277729 | 313..197 | 570 | 99.1 | Minus |
| 3R | 32079331 | 3R | 15277786..15277901 | 196..81 | 550 | 98.3 | Minus |
| 3R | 32079331 | 3R | 15277960..15278033 | 82..9 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:33 has no hits.
UFO02773.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:58 Download gff for
UFO02773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MRG15-RA | 77..930 | 9..856 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:59 Download gff for
UFO02773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MRG15-RA | 77..930 | 9..856 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:17 Download gff for
UFO02773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MRG15-RA | 77..930 | 9..856 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:17 Download gff for
UFO02773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15277006..15277555 | 313..856 | 96 | <- | Minus |
| 3R | 15277614..15277729 | 197..312 | 99 | <- | Minus |
| 3R | 15277786..15277900 | 82..196 | 98 | <- | Minus |
| 3R | 15277961..15278033 | 9..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:59 Download gff for
UFO02773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11102728..11103277 | 313..856 | 96 | <- | Minus |
| arm_3R | 11103336..11103451 | 197..312 | 99 | <- | Minus |
| arm_3R | 11103508..11103622 | 82..196 | 98 | <- | Minus |
| arm_3R | 11103683..11103755 | 9..81 | 100 | | Minus |
