UFO02777.5prime Sequence
996 bp (885 high quality bases) assembled on 2009-01-14
> UFO02777.5prime
CAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGGCCGTGGTG
GCCCAGGCCTATGGAGATTTCAAGTGCTCCCTGGCTGTTCCTGAGATTAC
CAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCATGCGCAATC
AGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTGGCCATGGGCGCC
TACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGCCGAGCACTTCTT
CAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGCTGGTGGAGTACC
TGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGATCTGATCAATGTG
CCGACTGTGGCCAAGCAGGAGTGGACCGATGGTGCCGCCGCCCTGTCCGA
CGCCCTCGACCTGGAGATCAAGGTGACCAAGTCCATCCGCAAGCTGATCC
AGACCTGCGAGAACAAGCCCTACAACCACTACCACCTGGTGGACTACCTG
ACCGGTGTCTATCTGGAGGAGCAGCTCCACGGACAGCGCGAGCTCGCCGG
CAAGCTGACCACTCTCAAGAAGATGATGGACACCAACGGCGAACTGGGCG
AGTTCCTGTTCGACAAGACCCTGGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
GAGTTTTGAGGTCATTACTGGATCTATCACAGGAGTCCAAGCGGGGCTCG
AATATCAATTACGCCCCGGCCTGGCACTCATCGCAAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAGCCATCACAACCGGCAGATGAACCTG
AATCGCAAGGGGCATCAGCCCCTTTGGTCGCTGCCTTAATATTTTG
UFO02777.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-RD | 1187 | CG2216-RD | 159..773 | 9..623 | 3075 | 100 | Plus |
| Fer1HCH-RC | 1227 | CG2216-RC | 199..813 | 9..623 | 3075 | 100 | Plus |
| Fer1HCH-RB | 1135 | CG2216-RB | 107..721 | 9..623 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30386319..30386596 | 353..76 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 30385987..30386257 | 623..353 | 1355 | 100 | Minus |
| 3R | 32079331 | 3R | 30387463..30387530 | 76..9 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:15:20 has no hits.
UFO02777.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:56 Download gff for
UFO02777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RB | 371..989 | 9..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:08 Download gff for
UFO02777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RB | 107..725 | 9..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:59 Download gff for
UFO02777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RB | 107..725 | 9..628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:59 Download gff for
UFO02777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30385983..30386256 | 354..628 | 99 | <- | Minus |
| 3R | 30386319..30386596 | 76..353 | 100 | <- | Minus |
| 3R | 30387464..30387530 | 9..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:08 Download gff for
UFO02777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26212041..26212318 | 76..353 | 100 | <- | Minus |
| arm_3R | 26213186..26213252 | 9..75 | 100 | | Minus |
| arm_3R | 26211705..26211978 | 354..628 | 99 | <- | Minus |
