UFO02782.5prime Sequence
215 bp (-60 high quality bases) assembled on 2009-01-14
> UFO02782.5prime
CAGTCGACATGTCAGCCAGCGCAGAGATTCACTCCCTCGCTCAGCGACGG
CGCTCTCTTTCTCTTCCCCTCTCCAACGAACCAAAGAACTCGAAACTCCC
GCTTTCCCAACAACAACTACAACAGCAGCAGCATGGACACCACGAACAAC
AACAACGCCCATCTATGCTTATTGAGGATGAGGGTCACGGAGTAATCGAA
CTGTCAAGCCATATC
UFO02782.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fal-RD | 2128 | CG9670-RD | 380..586 | 9..215 | 975 | 98.1 | Plus |
| fal-RB | 1925 | CG9670-RB | 177..383 | 9..215 | 975 | 98.1 | Plus |
| fal-RC | 2519 | CG9670-RC | 177..332 | 9..164 | 765 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19294943..19295098 | 9..164 | 765 | 99.4 | Plus |
| 3L | 28110227 | 3L | 19297046..19297096 | 165..215 | 210 | 94.1 | Plus |
Blast to na_te.dros performed 2014-11-28 23:23:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2584..2666 | 73..155 | 172 | 67.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3275..3323 | 104..155 | 145 | 78.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6829 | 108..155 | 141 | 77.1 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 515..573 | 92..153 | 141 | 72.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2487..2541 | 108..162 | 140 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2385 | 79..156 | 138 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2430 | 108..156 | 137 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6878 | 109..156 | 132 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2400 | 71..156 | 130 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2379 | 108..156 | 128 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2442 | 108..156 | 128 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2484..2546 | 108..171 | 128 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6788 | 108..156 | 128 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6809 | 108..156 | 128 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6842 | 108..156 | 128 | 73.5 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 543..591 | 108..156 | 128 | 73.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1160 | 108..156 | 128 | 73.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1157 | 109..159 | 122 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2442..2490 | 108..156 | 119 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2880..2928 | 108..156 | 119 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6437..6520 | 117..197 | 116 | 61.9 | Plus |
| BS | 5142 | BS BS 5142bp | 2012..2089 | 108..180 | 116 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1542..1589 | 108..155 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6767 | 109..156 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..2838 | 108..153 | 113 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2343 | 120..156 | 113 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2853 | 108..156 | 112 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6529..6596 | 116..181 | 110 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2358 | 108..156 | 110 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2778..2826 | 108..156 | 110 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6857..6905 | 108..156 | 110 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6890..6938 | 108..156 | 110 | 69.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1121..1171 | 108..161 | 110 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2481 | 114..159 | 106 | 73.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 975..1011 | 120..156 | 104 | 75.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1115 | 108..156 | 101 | 67.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1100..1148 | 108..156 | 101 | 67.3 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 600..637 | 93..130 | 100 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1563..1587 | 108..132 | 98 | 88 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2665 | 108..139 | 97 | 78.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3596..3618 | 110..132 | 97 | 91.3 | Plus |
UFO02782.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:00 Download gff for
UFO02782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fal-RB | 167..381 | 1..215 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:26 Download gff for
UFO02782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fal-RB | 169..383 | 1..215 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:57 Download gff for
UFO02782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fal-RB | 169..383 | 1..215 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:57 Download gff for
UFO02782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19294935..19295098 | 1..164 | 96 | -> | Plus |
| 3L | 19297046..19297096 | 165..215 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:26 Download gff for
UFO02782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19288035..19288198 | 1..164 | 96 | -> | Plus |
| arm_3L | 19290146..19290196 | 165..215 | 94 | | Plus |
