UFO02784.5prime Sequence
1019 bp (873 high quality bases) assembled on 2009-01-14
> UFO02784.5prime
CAGTCGACATGACGGTGACGAATCGGATGGAAATCGAGTCGGCCTACCAT
AAAGGCGAGGGATTCCGGTCCTACTACATCCAAAAGATCGAGGAACTGCA
GCTGGTGGTGGCCGAGAAGCACCAGAATTTGAGACGACTGCAGGCCCAGC
GCAATGAGCTCAATGCTAAAGTTCGGATGCTGCGGGAGGAGCTGCAGCTG
CTCCAGGAACAGGGTAGCTATGTGGGCGAGGTTGTGAAGCCCATGGACAA
GAAGAAAGTGCTGGTCAAGGTGCATCCCGAGGGCAAGTTCGTCGTCGATC
TGGACAAAAACATAGATATCAACGACGTAACCCCCAATTGCCGCGTGGCC
CTGCGCAATGAGAGCTATACGCTGCACAAGATTCTGCCCAATAAGGTGGA
TCCGCTGGTCTCGCTTATGATGGTTGAAAAAGTTCCTGACTCCACATACG
AAATGGTTGGCGGCCTGGACAAACAGATTAAAGAGATCAAGGAGGTGATT
GAGTTGCCCGTAAAGCATCCAGAGCTGTTTGATGCCTTGGGTATTGCCCA
GCCGAAGGGAGTGCTCCTTTATGGACCTCCAGGTACAGGAAAGACTTTGC
TGGCCAGGGCCGTTGCCCATCACACCGAGTGCACCTTCATTCGCGTCTCT
GGCTCAGAGCTGGTCCAGAAATTCATCGGCGAGGGTTCGCGCATGGTTCG
AGAACTCTTTGTAATGGCCCGGGAACATGCACCATCAATTATTTTCATGG
ACGAATCGATTCCATTGGCTCGTCGCGTATTGAGTCAGTTCCGGCGGCGA
TTCCGAGTGCAGCGTACTATGCTGGAGCTACTTAACCAGCTGGACGCTTT
GAGCCACCAAGACATCAAGTGATCATGCCACCAATCGCATGACATCCTGA
TCCCGCTCTGCTGCGTCCGCCGTATGATCGCAAGATCGAGTTCCCGCCAC
AACGAGGAGCCGCTGAATCTTGAAATCCACTCCGTAAATGACTCAACCGT
GCATTATCTGCCCAGATCG
UFO02784.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt6-RA | 1404 | CG1489-RA | 127..1165 | 9..1019 | 4485 | 96.9 | Plus |
| Rpt6R-RA | 1445 | CG2241-RA | 290..1111 | 139..950 | 1395 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21316547..21317340 | 170..950 | 3355 | 98.4 | Plus |
| 3R | 32079331 | 3R | 30582738..30583322 | 754..170 | 1260 | 81 | Minus |
| X | 23542271 | X | 21316258..21316403 | 26..171 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:15:24 has no hits.
UFO02784.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:59 Download gff for
UFO02784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros45-RA | 119..1088 | 9..963 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:10 Download gff for
UFO02784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt6-RA | 127..1096 | 9..963 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:01 Download gff for
UFO02784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt6-RA | 127..1096 | 9..963 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:01 Download gff for
UFO02784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21316178..21316195 | 9..26 | 100 | -> | Plus |
| X | 21316259..21316403 | 27..171 | 100 | -> | Plus |
| X | 21316549..21317355 | 172..963 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:10 Download gff for
UFO02784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21187286..21187430 | 27..171 | 100 | -> | Plus |
| arm_X | 21187205..21187222 | 9..26 | 100 | -> | Plus |
| arm_X | 21187576..21188382 | 172..963 | 98 | | Plus |
