Clone UFO02785 Report

Search the DGRC for UFO02785

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:27
Well:85
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptmts-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO02785.5prime Sequence

1052 bp (928 high quality bases) assembled on 2009-01-14

> UFO02785.5prime
CAGTCGACATGGAGGATAAAGCAACAACAAAAGATCTTGATCAATGGATT
GAGCAGTTGAACGAATGCAATCAGTTGACAGAGACACAAGTTCGCACCCT
CTGCGACAAGGCCAAGGAGATTCTCTCCAAGGAGTCCAATGTGCAGGAGG
TAAAATGCCCGGTGACAGTGTGCGGAGATGTCCACGGTCAGTTTCACGAC
CTCATGGAGCTCTTCCGGATAGGCGGCAAGTCTCCGGACACCAACTACCT
GTTCATGGGCGACTACGTGGACCGTGGATACTACTCCGTGGAGACCGTGA
CCCTTCTGGTGGCCCTGAAGGTTCGCTATCGCGAGCGCATCACCATCCTG
CGCGGTAACCACGAGTCGCGCCAGATCACACAGGTGTACGGCTTCTACGA
CGAGTGCCTGCGCAAGTATGGCAATGCCAACGTTTGGAAGTACTTCACGG
ATCTGTTCGACTACTTGCCACTGACGGCACTCGTCGACGGGCAGATCTTC
TGCCTGCACGGAGGCCTCAGTCCCTCGATCGACAGTCTGGATCACATTCG
GGCCCTCGATCGCTTGCAGGAGGTTCCGCACGAGGGTCCCATGTGCGATC
TGCTCTGGTCCGATCCCGATGACAGGGGTGGCTGGGGAATCTCGCCTCGT
GGCGCCGGTTACACCTTTGGCCAGGATATTTCGGAAACCTTTAACAACAC
AAACGGCCTGACACTGGTGTCGCGCGCCCATCAGCTGGTGATGGAGGGCT
ACAACTGGTGTCACGATCGCAATGTGGTCACAATATCTCAGCGCCAAACT
ATTGCTACCGCTGTGGCAACCAAGCGGCTCTTATGGAACTGGATGATTCA
CTTAAATTTTCATTCCTACATTTGATCCAGCACCCAGGCGCGGGGGAGCC
TCATGTAACGCGAAGAACACCGATTATTTCTTGCAGCTTCTAGACAATCG
TGCGCGCGGCCAGTTAGTGTCATATCTTATCTATCATATCATATTCACAC
TAGCTAGGAATCTGTCATGACTATGCTGATTCCACATAAAACGCCGGCCA
CG

UFO02785.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
mts-RC 1507 CG7109-RC 260..1183 9..930 4510 99.5 Plus
mts-RB 3102 CG7109-RB 403..1326 9..930 4510 99.5 Plus
mts-RA 2051 CG7109-RA 260..1183 9..930 4510 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7830460..7831026 109..675 2835 100 Plus
2L 23513712 2L 7831467..7831659 673..864 915 99.5 Plus
2L 23513712 2L 7828052..7828154 9..111 515 100 Plus
X 23542271 X 20422199..20422708 671..162 510 73.3 Minus
X 23542271 X 6372311..6372515 444..240 365 78.5 Minus
X 23542271 X 16558837..16558960 282..159 200 77.4 Minus
2L 23513712 2L 7831740..7831790 870..921 195 96.2 Plus
X 23542271 X 16567436..16567559 282..159 185 76.6 Minus
Blast to na_te.dros performed on 2014-11-28 20:48:52 has no hits.

UFO02785.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:51 Download gff for UFO02785.5prime
Subject Subject Range Query Range Percent Splice Strand
mts-RA 305..1242 1..938 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:59 Download gff for UFO02785.5prime
Subject Subject Range Query Range Percent Splice Strand
mts-RA 255..1192 1..938 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:09 Download gff for UFO02785.5prime
Subject Subject Range Query Range Percent Splice Strand
mts-RA 255..1192 1..938 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:09 Download gff for UFO02785.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7828047..7828153 1..110 96 -> Plus
2L 7830462..7831025 111..674 100 -> Plus
2L 7831469..7831659 675..864 99 -> Plus
2L 7831734..7831790 865..921 94 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:59 Download gff for UFO02785.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7831469..7831659 675..864 99 -> Plus
arm_2L 7831734..7831790 865..921 94 == Plus
arm_2L 7828047..7828153 1..110 96 -> Plus
arm_2L 7830462..7831025 111..674 100 -> Plus