UFO02787.5prime Sequence
956 bp (807 high quality bases) assembled on 2009-01-14
> UFO02787.5prime
CAGTCGACATGCTGGTTGGACTCAGCGACCAGCTAGCGCGGATCATGGAG
AGCGTCTTCGAGGCGTACTTGGGCCCAGACAGCGTCCTCGCTAGTGCAGT
TGGCCAGGCGGTGGGCAGCGGAGAGCCGGAGGACATTCCCCGAAGAAACA
CCGACGTCTGGGTCCTGGGAAAGAAGTACAACGCCATACAGGAGCTAGAG
CTCATCCGACGGGACATTCAGTCGCGCCTGTGGTGCACATATCGCCATGG
ATTTTCGCCGTTGGGAGAAGTCCAGCTCACCACGGACAAGGGCTGGGGCT
GCATGCTGCGCTGTGGTCAGATGGTTCTCGCCCAGGCCCTGATCGACTTA
CATTTGGGACGCGACTGGTTCTGGACGCCGGACTGCCGTGATGCCACCTA
CCTCAAGATCGTGAACCGTTTTGAAGACGTAAGGAATAGCTTCTACTCCA
TACACCAGATTGCCCAGATGGGAGAGTCCCAGAACAAAGCGGTCGGCGAG
TGGCTGGGACCGAATACAGTAGCCCAGATTCTCAAAAAACTAGTGCGCTT
CGATGACTGGAGCTCCCTGGCGATTCACGTGGCCATGGATAGCACAGTGG
TATTGGATGACGTATATGCGTCGTGCCGAGAAGGAGGCTCGTGGAAAGCC
ACTGCTGCTCATAATCCCCCTGCGCTTGGGCATCACAGACATTAACCCGC
TTTACGTGCCTGCCTTAAAGCGCTGCCTTGAACTAGACAGCAGTTTTGCA
TGATCGGAGGTCGACAAACCAGGCTCCTGTACTTCCTGGGCTTTGTGGAC
GATGAGTTCTTTTACCTAGATCCTCAATACCACGCAGAAAACGGGCGGCG
GTGCAAAGAATACTTGCTTGCCGGCAGAACAGGACTTACGACGAGACCTA
ACATCAAAAGCTTGCTTGCTTCGCCTGAACTTCTCCGCCATGACCCTCGC
TTGCGT
UFO02787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg4a-RB | 4075 | CG4428-RB | 334..1275 | 9..955 | 4190 | 97.1 | Plus |
| Atg4a-RA | 2076 | CG4428-RA | 334..1275 | 9..955 | 4190 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1081577..1081920 | 192..535 | 1720 | 100 | Plus |
| 2L | 23513712 | 2L | 1081244..1081427 | 9..192 | 920 | 100 | Plus |
| 2L | 23513712 | 2L | 1082116..1082439 | 612..942 | 900 | 91 | Plus |
| 2L | 23513712 | 2L | 1081973..1082056 | 532..615 | 405 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:12:52 has no hits.
UFO02787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:49 Download gff for
UFO02787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4-RA | 326..1273 | 1..956 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:55 Download gff for
UFO02787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4-RA | 328..1275 | 1..956 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:23 Download gff for
UFO02787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg4a-RA | 328..1275 | 1..956 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:23 Download gff for
UFO02787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1081238..1081427 | 1..192 | 98 | -> | Plus |
| 2L | 1081578..1081920 | 193..535 | 100 | -> | Plus |
| 2L | 1081977..1082056 | 536..615 | 100 | -> | Plus |
| 2L | 1082120..1082454 | 616..956 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:55 Download gff for
UFO02787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1081578..1081920 | 193..535 | 100 | -> | Plus |
| arm_2L | 1081977..1082056 | 536..615 | 100 | -> | Plus |
| arm_2L | 1082120..1082454 | 616..956 | 91 | | Plus |
| arm_2L | 1081238..1081427 | 1..192 | 98 | -> | Plus |
