UFO02788.5prime Sequence
954 bp (820 high quality bases) assembled on 2009-01-14
> UFO02788.5prime
CAGTCGACATGTCCAGAAATAGGGCTGCCATGGTCAGCGCCTTTCGGCTC
TTCCTGCGACCAGCGACCACCACCACCCATAGAAGTCTCGCCCTGCGTTT
GGCCCCCGGCACCACCTTCGCCCTGCACTTACGGCCATGTCATGAGCTTC
AGCAGCACAGAAGCTTCGCATCCACGGCGGAGGATGGCGAAACGGACAAG
CATAAAAAACCGACGACGGGAGAAGACATCTATGTGGAATACGTGAATGG
CATGCCACACATGACTGTACGACTTCCCAGTCGCAATGAACTCTGCCAGT
TTGCCCTGAAACCCATCTCCCACAACGTTGGTGATCTGTTAGCCATGCTC
AGGGCTGAGGATCGGGGCATCGATCGAGCTGCGGTGATCAACAAGCATGG
TGTGCGAATCGCGTCGTCCTGCACCATCGAAAGCTTGCTGGATGACTCGT
TTAGCATACAAATCAACAATCGCACATTGGATGTGAATCCTCCCAAACGT
GACAAAGTCACATTGGAGTCCATGGACAAAGTGGGCGATGTTCGTAAGGT
TATTGCTCAGCTCTACGAGGCATTCAACGTCGGAGAATATCAGCTGGAGA
AGAGCAATCAATTGGCCAAAGAACTGGAGACCCTACGCTATGAACTAGAA
CCACTGGAAGAGAAAAACTGGAACTCAGCAAAAAGGCCGCTCGTCGCACT
AACTTTATGACTTGATGGGTTTGGGCCTAATGTCGGTGCAATTTGGCATT
TTGGCACGACTGACTTGGTGGGAATACTTCTTGGATATTTATGAACCCGT
ACTATTTTTGTTACTTACGGACGACATGGCAATGTATGCTACTATTGGGT
CACTAGAGGAATATATGGATGAGATTGTGAAGAATCCGCGATCCTCACTT
TCCCTTTAAGACCGCCAAAAGTTCAGGTCGATGTGACCTACCACCGACTG
AACG
UFO02788.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18769-RD | 1811 | CG18769-RD | 282..1220 | 8..934 | 4090 | 97 | Plus |
| CG18769-RB | 2623 | CG18769-RB | 1094..2032 | 8..934 | 4090 | 97 | Plus |
| CG18769-RC | 1778 | CG18769-RC | 249..1187 | 8..934 | 4090 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6590602..6590835 | 221..454 | 1170 | 100 | Plus |
| 3L | 28110227 | 3L | 6551832..6551949 | 8..125 | 590 | 100 | Plus |
| 3L | 28110227 | 3L | 6591215..6591412 | 663..855 | 590 | 92.4 | Plus |
| 3L | 28110227 | 3L | 6590891..6590999 | 452..560 | 545 | 100 | Plus |
| 3L | 28110227 | 3L | 6591055..6591160 | 557..662 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 6562321..6562418 | 125..222 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:05:25 has no hits.
UFO02788.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:49 Download gff for
UFO02788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18769-RB | 1084..2024 | 1..926 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:05 Download gff for
UFO02788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18769-RC | 239..1179 | 1..926 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:22 Download gff for
UFO02788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18769-RC | 239..1179 | 1..926 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:22 Download gff for
UFO02788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6551822..6551949 | 1..125 | 96 | -> | Plus |
| 3L | 6562322..6562418 | 126..222 | 100 | -> | Plus |
| 3L | 6590604..6590835 | 223..454 | 100 | -> | Plus |
| 3L | 6590894..6590999 | 455..560 | 100 | -> | Plus |
| 3L | 6591059..6591160 | 561..662 | 100 | -> | Plus |
| 3L | 6591214..6591417 | 663..858 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:05 Download gff for
UFO02788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6584314..6584517 | 663..858 | 92 | -> | Plus |
| arm_3L | 6544922..6545049 | 1..125 | 96 | -> | Plus |
| arm_3L | 6555422..6555518 | 126..222 | 100 | -> | Plus |
| arm_3L | 6583704..6583935 | 223..454 | 100 | -> | Plus |
| arm_3L | 6583994..6584099 | 455..560 | 100 | -> | Plus |
| arm_3L | 6584159..6584260 | 561..662 | 100 | -> | Plus |
