UFO02789.5prime Sequence
1101 bp (1002 high quality bases) assembled on 2009-01-14
> UFO02789.5prime
CAGTCGACATGGAGTGGACGCGCGAGAAGACGCTGCAGCTGATCAGTGAG
TACCGCAGCCGACGCGGGCTGTGGGACATGACTTGCGACGAGTACCGGAA
GAAGGACGTCAAGCAGCGGCTCTTGAACGAAGTCAGCCAAGTGCTGGGCG
GGAACATCCCGATCAACGAGCTGGAGAAGAAGTTCCACACGCTGCGCACG
CAGTACCACCGCGAGATCAGTCGCATGAAACGCAAGGAGCCCTACAACTC
CAAGTGGTTTGGCTTCAAGAACCTGGTGTTTCTCAGCTCGCCCTACGCCT
GCCGCTCCACAAAGGGTCGCCTGAAGGCGGATCTGCAGGGCGACGAGCGA
AAGTTTGTCCTGGGCGAGGTCACCGCCGATCATAACAGCGACAGCAGCAC
GCCGGCCAATCACAACAGCAACACGAACGCCAACATGAACGAGGAGTACC
TCCGCAAGAACCACGCCAGCAGTCGGGCCCAAGAGCTGGAGAAACTTATC
GAGGAGACAACCAAAGACGTGGATGACATTGATGAGTCGGAGCTAGAGGA
GGGCGAAGTCAAGCCTAAGCAGGCGAAAGAGATGAGCGTCCGCTTTGTAA
GCCTCAACGAACAGGAAGAGACGGAGCCGCTGGAGAATCATCATCAGACG
CTGATGGACCTGCACCACCAGGGCAACGCCGTGGAAGCCGTCAGCTTCCA
GGCCAACGAGAGCGGTGAACTGCACTACCAGACCACACCAACCCAAAGCA
CGGGCAGCAGCTCAGTGCACGTAATGCCCACACGAATCATTAAGATCCAG
CGGCGGGACACGTCGAGTGGGCAGGAGGATAGCTACTTTGAGGAGCACAC
GCAACTGCATCCGCCGCCGGTCAAACGCATGTACTACGAAGGCCAGTCCA
GCGTCGCACAACACCACCTCCATTCTGTCCCCCGCACTGGAAAGCAGTGC
ATGCACAGCAGCAGTGTGCTGACCACCTCGCCGATACATGAGTACTTGCG
CTGCCCAAGGTGAACACGCCGCCAAACAGCCAGGCCAGCATCCAGTCACT
CCGCCACCATTGTCAGCTGCCGCAAGCGCGACAGTTTGCACGTTGGAAGT
A
UFO02789.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11504-RC | 1788 | CG11504-RC | 380..1473 | 9..1080 | 4910 | 97.7 | Plus |
| CG11504-RA | 1792 | CG11504-RA | 384..1477 | 9..1080 | 4910 | 97.7 | Plus |
| CG11504-RB | 1856 | CG11504-RB | 448..1541 | 9..1080 | 4910 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29998347..29999323 | 9..982 | 4680 | 99.3 | Plus |
Blast to na_te.dros performed 2014-11-28 19:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2366..2456 | 382..472 | 122 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2438 | 384..476 | 120 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2442 | 384..470 | 120 | 65.9 | Plus |
UFO02789.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:47 Download gff for
UFO02789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11504-RC | 483..1589 | 9..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:33 Download gff for
UFO02789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11504-RB | 448..1554 | 9..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:35 Download gff for
UFO02789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11504-RB | 448..1554 | 9..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:35 Download gff for
UFO02789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29998347..29999453 | 9..1090 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:33 Download gff for
UFO02789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25824069..25825175 | 9..1090 | 97 | | Plus |
