UFO02790.5prime Sequence
1004 bp (843 high quality bases) assembled on 2009-01-14
> UFO02790.5prime
CAGTCGACATGAGGAGGTGTCGCAACACCCCGTTCGCAATTGTCATTGCT
CCGATCTTGATTTGTGCTTCTTTGGTCTTGGCCCAAGATTTTGGCTACGA
GGGCAGACATGGACCCGAGCACTGGAGCGAGGATTACGCCCGCTGCAGTG
GAAAGCACCAGAGTCCCATAAACATCGACCAGGTCAGCGCCGTGGAGAAG
AAGTTTCCCAAGCTGGAGTTTTTCAATTTCAAAGTGGTGCCCGACAATCT
TCAAATGACGAACAACGGTCACACGGTGCTGGTGAAGATGAGCTACAACG
AGGACGAGATCCCAAGTGTGCGTGGTGGTCCTTTGGCGGAGAAAACTCCT
CTGGGCTATCAGTTCGAACAGTTCCACTTTCACTGGGGCGAGAACGATAC
GATTGGCAGTGAGGATTTGATCAACAATCGTGCCTATCCCGCCGAGTTGC
ACGTGGTATTGCGGAATCTAGAGTATCCGGACTTTGCCAGCGCCCTGGAC
AAGGATCACGGCATCGCCGTGATGGCCTTCTTCTTTCAGGTGGGCGACAA
ATCAACTGGTGGCTATGAGGGCTTCACCAACTTGCTCTCCCAGATTGACC
GCAAAGGCAAGAGCGTTAATATGACCAATCCACTTCCACTGGGCGAGTAC
ATCTCGAAGTCCGTGGAGAGTTACTTTAGCTACACTGGTTCTCTGACCAC
ACCGCCTTGCAGTGAGGAGTCACCTGGATTGATTTCACAACGCCCATTGA
CATCACGGAGAAGCAGTTGAATGCCTTCCGTCTGCTGACAGCCAACGATG
ATCATCTGAAGAACAATTTCCGACCCATCCAGCCGCTGACGATCGCACCT
TGTACAAGAACTACATAGAATTTCGATTCCCAACATGGGCCTCGATTCCA
CTCGTCGATGCGGAAAATGCGCTGCAGTGGAAGGACAAAGCGGCAGCATG
CTGTTGCCCTCGTGTCCTCGCTGCATTGTCAGAACTCCATTCGGTTGGCA
GCTT
UFO02790.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CAH2-RA | 1830 | CG6906-RA | 222..1215 | 8..991 | 4565 | 98.1 | Plus |
| CAH2-RB | 1619 | CG6906-RB | 70..1004 | 67..991 | 4270 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12181675..12182151 | 66..542 | 2385 | 100 | Plus |
| 3L | 28110227 | 3L | 12182208..12182437 | 538..766 | 1100 | 99.6 | Plus |
| 3L | 28110227 | 3L | 12182495..12182654 | 763..921 | 625 | 96.9 | Plus |
| 3L | 28110227 | 3L | 12180097..12180155 | 8..66 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:47:20 has no hits.
UFO02790.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:45 Download gff for
UFO02790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAH2-RA | 219..1212 | 8..991 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:54 Download gff for
UFO02790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAH2-RA | 222..1215 | 8..991 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:09 Download gff for
UFO02790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAH2-RA | 222..1215 | 8..991 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:09 Download gff for
UFO02790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12180097..12180155 | 8..66 | 100 | -> | Plus |
| 3L | 12181676..12182148 | 67..539 | 100 | -> | Plus |
| 3L | 12182210..12182437 | 540..766 | 99 | -> | Plus |
| 3L | 12182499..12182732 | 767..991 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:54 Download gff for
UFO02790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12173197..12173255 | 8..66 | 100 | -> | Plus |
| arm_3L | 12174776..12175248 | 67..539 | 100 | -> | Plus |
| arm_3L | 12175310..12175537 | 540..766 | 99 | -> | Plus |
| arm_3L | 12175599..12175832 | 767..991 | 92 | | Plus |
