UFO02792.5prime Sequence
1009 bp (854 high quality bases) assembled on 2009-01-14
> UFO02792.5prime
CAGTCCACATGAGCTATTGGCGTGTGACGTCATCGTTTTTGCTAGCCAGG
GCACGGCCACGCCTCCCACAAACATTACGCCCACTGAGCACCATGAACGA
ATGCCGGAAGAACATCACAAACATCACAAACATTACAGCGAACAACAGCA
TTCTATGCGCAAAGAGCATTAGCAAAAAGCATTTGTTTCTAGAGAAACGG
AGCATGTCGGATCGTTCGGAGAACTCCAAGGATGTGGCAAAGGGACGGGA
TATATCAAATCCAATGGAACTAACAGCCGAGGATCGACTGGCCATTGAGG
AGCGGCAAAATAAAGCGTTCGCCTTCTTCGCCGAAACCCTGCAAATCTAC
GGCGTCGAGGAGCTAATTTTCTGTTTCAACGGCGGCAAGGATTGCACCGT
GCTGCTCGATCTCCTTATGCGTTACCTGCGCCAGGAGAACATCTCCAGCG
GCGACATTCCCATGCTGTACATTAAATCCGGCGATTCGTTTCCGGAAATC
GATGAGTTCGTCGAGCGTTGCGTACGCAACTACCGCGTCCAGTTGGTTCA
GTACGAGGGTACGCTCAAGGAGGCACTCACCCACATGTCGTCGGACATGC
CGCGGATCAAGGCCGTCTTCGTGGGCAGCCGCAACACGGATCCCTACTGC
CAGCATCTGGCGCCCATGCATCCCACGGACAACGACTGGCCGCCGATGAT
GCGCCTGAATCCGCTGCTGGAGTGGAGCTACCACGACGTCTGGCACTACA
TCCACTTGAACTCGGTGCCCTATTGCAGCCTGTACGATCGGGGCTACCCT
TCGATCGGGAATCGTGCGACACAGTGCCTAATCCGCACCTCCGACGCACC
GATGCCGAGTGTGATGTGTTCTAATTCCGATGCCGTCAGCTCTGCGAACT
GGGTGGCTATCTGTCCCGCTGGGAGCTTCATGTATGCCACATGGACGTGC
TGGTCGCTGCCCAGTAAGCAGCTTTCTGACTAGTCGTCTGGCGCGGCGGC
CCGGTAGTG
UFO02792.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4407-RA | 1338 | CG4407-RA | 174..1142 | 6..968 | 4455 | 97.9 | Plus |
| CG4407-RB | 1235 | CG4407-RB | 86..1039 | 21..968 | 4380 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12902317..12902967 | 670..20 | 3240 | 99.8 | Minus |
| X | 23542271 | X | 12901592..12901851 | 927..672 | 980 | 95.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:31:26 has no hits.
UFO02792.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:45 Download gff for
UFO02792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4407-RA | 136..1117 | 1..976 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:02 Download gff for
UFO02792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4407-RA | 169..1150 | 1..976 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:02 Download gff for
UFO02792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4407-RA | 169..1150 | 1..976 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:02 Download gff for
UFO02792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12901541..12901851 | 672..976 | 93 | <- | Minus |
| X | 12902316..12902966 | 21..671 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:02 Download gff for
UFO02792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12795574..12795884 | 672..976 | 93 | <- | Minus |
| arm_X | 12796349..12796999 | 21..671 | 99 | <- | Minus |
