UFO02793.5prime Sequence
777 bp (30 high quality bases) assembled on 2009-01-14
> UFO02793.5prime
CAATCCACATGAAAAGGCTCGCGGACCCGGATCGTGGGGAAGCCCTCAGA
CTGCAAATCGAGTGCGAGTGGGTGCTGCGCCAAGAAGTGCACCCGATACT
GAATCAATTAAGGAGGATTCTGGTGGAGTGCGCTCATCGATTTCCGGTGC
CCCTTGACTACAACGAGGGAAAGAAAACTGACAAGTTCCTACTCACCGTG
TCGCCCGATCAGCTGAAGGCCGTGCTGACCCTAAAGGGCGATGCCGTCAC
CCTTGCTGACTTTAGCTTTAAGCTGTGCAAGGCACCGAGCCAAACGCAAC
GTACCTCCATTACACATGACTCTCCCTGGAAGTTGCAGCAGGTCCAGGAT
GCGGCCAATCTTCTGCAGACCGCCGTCAACCACATATACGATGTCGACGA
CTCTTATCACTTCAAAACCTCCGACGAATGGCTGCTTGAGATAGGCAACA
TTCTGGATGCCCTGCGGCGGGGCAGAAACAGTTTGCTGGTGCCCAAAAAA
AATCCCATCCATGAACTAATCGAAGGGCGCAATATGAAATCGCTGGTGCC
CAATCTGCCCTAGGATTTGGCCGTTAGCTTCTACCTGCGGAGCCACAAGC
TGATCATTGCCGTCTACCTTGTGCTGAACAACCAGTGCTGATGCGCTTCG
ATTCCCGCCAAGCGGAGGCCTCTGTCTAGTGCCTTAACGACGTGCTACTG
CTGCTGATGAATGGACATAACTGTGCAGCAATTAAAAGACAGATATCTGT
GTTTTCGGTGTCAACGATTCACAGTTG
UFO02793.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rogdi-RA | 2028 | CG7725-RA | 134..908 | 9..777 | 2975 | 92.8 | Plus |
| rogdi-RB | 2335 | CG7725-RB | 441..1215 | 9..777 | 2975 | 92.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17052955..17053283 | 416..741 | 1135 | 91.8 | Plus |
| 3L | 28110227 | 3L | 17052721..17052878 | 258..415 | 730 | 97.5 | Plus |
| 3L | 28110227 | 3L | 17052002..17052129 | 125..252 | 520 | 93.8 | Plus |
| 3L | 28110227 | 3L | 17051860..17051933 | 53..126 | 295 | 93.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:48:17 has no hits.
UFO02793.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:44 Download gff for
UFO02793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rogdi-RA | 121..903 | 2..777 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:26 Download gff for
UFO02793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rogdi-RB | 433..1215 | 2..777 | 92 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:19 Download gff for
UFO02793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rogdi-RB | 433..1215 | 2..777 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:19 Download gff for
UFO02793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17051861..17051932 | 54..125 | 93 | -> | Plus |
| 3L | 17052003..17052134 | 126..257 | 92 | -> | Plus |
| 3L | 17052721..17052878 | 258..415 | 97 | -> | Plus |
| 3L | 17052955..17053285 | 416..742 | 91 | -> | Plus |
| 3L | 17054298..17054334 | 743..777 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:26 Download gff for
UFO02793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17045821..17045978 | 258..415 | 97 | -> | Plus |
| arm_3L | 17044961..17045032 | 54..125 | 93 | -> | Plus |
| arm_3L | 17045103..17045234 | 126..257 | 92 | -> | Plus |
| arm_3L | 17046055..17046385 | 416..742 | 91 | -> | Plus |
| arm_3L | 17047398..17047434 | 743..777 | 91 | | Plus |
