UFO02794.5prime Sequence
998 bp (818 high quality bases) assembled on 2009-01-14
> UFO02794.5prime
CAGTCGACATGGCATCCCACTGGCCCGAGAACGTTGGCATACGCGCCATC
GAGATTCTCTTCCCCTCCCAGTACGTGGACCAAACGGAGCTGGAGACCTT
CGATGGTGCCTCCGCGGGCAAGTACACAATTGGCCTGGGCCAGGCCAAGA
TGGGCTTCTGCTCGGACCGCGAGGATGTCAACTCTCTCTGCCTGACGGTT
GTGAGCCGCCTGCTGGAGCGGCAACATGTGAAGCACTCGGAGATCGGACG
ACTGGAGGTGGGCACCGAGACCATTGTGGACAAGTCGAAGTCGGTGAAGT
CCGTGCTGATGCAGCTGTTCGCCGAGAGCGGGAACACGGACATCGAGGGC
ATCGACACCACGAACGCCTGTTACGGCGGCACGGCGGCGCTCTTCAATGC
CGTCAATTGGGTGGAATCTTCTAGCTGGGACGGCCGCCTGGCTTTGGCCG
TTTGTGCTGATATCGCCGTGTACGCCAAGGGTGCAGCGCGCCCAACTGGT
GGTGCGGGTGCTGTGGCTATGCTGGTGGGTCCAAATGCGCCGCTTATCCT
CGATCGTGGACTACGCGCAACGCACATGGAGCACGCCTACGACTTTTACA
AGCCGGACCTCAGCTCCGAATACCCAACGGTAGATGGAAAGCTCTCTATT
CAGTGCTACCTTTCTGCTCTGGACACCTGCTACAGGCTGTATCGCAAGAA
GTTCGACCAGCAACAGAAGGATACTTCCAAGCACCGGCCAGCCTGAGCAC
TTCGATGCTATCCTATTCACACATCGGTCTGCAGTTGGTGCAAAATCTGT
GGGTCCGCCTGAGCTCAACAACTCCTGCTGAAAATAGAGGAGTAGCGACG
AAGCATTTTTCCTACCTGAACGTTGATACGCTACCTGGAAAGCACCTACT
TTGATCGAATGTGGATAATGCTTCAGTGACCAGTCGCGCAAATTCTTGCC
ACAGAACAAATAATCCGTGCTGCTGCCACCAGTGCCAATAGTACACAC
UFO02794.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmgs-RF | 1900 | CG4311-RF | 137..1078 | 8..935 | 4010 | 96.2 | Plus |
| Hmgs-RE | 1803 | CG4311-RE | 40..981 | 8..935 | 4010 | 96.2 | Plus |
| Hmgs-RD | 1879 | CG4311-RD | 116..1057 | 8..935 | 4010 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16339479..16340281 | 8..805 | 3720 | 99 | Plus |
Blast to na_te.dros performed 2014-11-28 19:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 1400..1457 | 287..344 | 110 | 65.5 | Plus |
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2430..2467 | 329..366 | 109 | 76.3 | Plus |
UFO02794.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:06:52 Download gff for
UFO02794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmgs-RB | 147..1082 | 1..925 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:25 Download gff for
UFO02794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmgs-RD | 112..1047 | 1..925 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:15 Download gff for
UFO02794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmgs-RD | 112..1047 | 1..925 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:15 Download gff for
UFO02794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16339475..16340443 | 1..955 | 95 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:25 Download gff for
UFO02794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12226980..12227948 | 1..955 | 95 | <- | Plus |
