UFO02801.5prime Sequence
1159 bp (1054 high quality bases) assembled on 2009-02-18
> UFO02801.5prime
CAGTCGACATGGCGAACATGGCAGTGTCGCGGATCAAGCGGGAGTTCAAG
GAGGTGATGCGCAGCGAGGAGATCGTCCAGTGTTCCATCAAAATCGAACT
GGTCAATGACAGTTGGACGGAGCTGCGCGGCGAGATCGCCGGTCCGCCTG
ACACGCCCTACGAGGGCGGCAAGTTCGTCCTGGAGATCAAGGTGCCCGAG
ACATATCCCTTCAATCCACCAAAGGTACGCTTCATAACGCGCATCTGGCA
TCCGAATATATCGTCGGTTACGGGTGCGATTTGCTTGGACATCTTAAAGG
ACAACTGGGCTGCAGCGATGACACTGCGCACCGTACTGCTGTCGCTGCAG
GCGCTCCTGGCCGCCGCAGAGCCGGACGATCCACAGGACGCAGTGGTGGC
CTATCAGTTTAAGGACAAGTACGATCTGTTCCTGCTTACGGCCAAGCACT
GGACCAACGCGTATGCGGGCGGACCGCACACCTTTCCCGATTGTGATTCA
AAGATCCAACGTCTCAGGGACATGGGCATCGACGAGCATGAGGCGCGCGC
CGTGCTCTCCAAGGAGAATTGGAATTTGGAGAAGGCCACCGAGGGCCTGT
TCAGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGGAAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCA
GCACCTTGTCGCCTTGCGTTATATATTTGCCCATGGTGAAAACGGGGCGA
GAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGTTGAAACTCACCCA
GGGAATTGCCTGAAACGAAAAACATATTCCTCATTACCCTTTAGGAATAG
CAGTTTTCACCGAACGCCACTCTGCCATATATGTGTTAAGACTGCCGGAA
TCGCCTCGT
UFO02801.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc4-RC | 1709 | CG8284-RC | 357..954 | 8..605 | 2990 | 100 | Plus |
| Ubc4-RB | 1473 | CG8284-RB | 357..954 | 8..605 | 2990 | 100 | Plus |
| Ubc4-RA | 1107 | CG8284-RA | 357..954 | 8..605 | 2990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9699344..9699726 | 223..605 | 1915 | 100 | Plus |
| 3L | 28110227 | 3L | 9698964..9699123 | 70..229 | 800 | 100 | Plus |
| 3L | 28110227 | 3L | 9698692..9698755 | 8..71 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:46:04 has no hits.
UFO02801.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:28 Download gff for
UFO02801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UbcD4-RA | 348..954 | 1..613 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:07 Download gff for
UFO02801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UbcD4-RA | 354..960 | 1..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:14 Download gff for
UFO02801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc4-RA | 354..960 | 1..613 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:14 Download gff for
UFO02801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9698689..9698755 | 1..71 | 94 | -> | Plus |
| 3L | 9698966..9699118 | 72..224 | 100 | -> | Plus |
| 3L | 9699346..9699732 | 225..613 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:07 Download gff for
UFO02801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9691789..9691855 | 1..71 | 94 | -> | Plus |
| arm_3L | 9692066..9692218 | 72..224 | 100 | -> | Plus |
| arm_3L | 9692446..9692832 | 225..613 | 99 | == | Plus |
