UFO02803.5prime Sequence
1146 bp (1038 high quality bases) assembled on 2009-02-18
> UFO02803.5prime
CAGTCGACATGGCTTCGATTGTGGAGAAAGTGCGTCGCATTTTGGACTCA
AAAGATCTGGGCGACATCACAACGGAACTGTGTGACTTTTCTCTTAAGGA
ACAGAATGCCACCGCCGAGGCCCAGGGAGTACAGCCCTCATCCGCATCCG
ATTTTGTGCCCATTCTTGGACAGACAGTCACCTATATTGTGGCCTGTGTG
TTGATCAATGAGCACGACGAGCTTCTGATGATCGAGGAGGCCAAACAGAG
CTGTGCCGGCAAGTGGTACTTACCCGCTGGTCGCATGGAAAGGGGCGAAT
CCATCACGGAGGCAGCCGCCCGGGAAGTTTTCGAAGAGACTGGTCTAAAT
GCCGAGCTGACCACTCTATTAGCGGTGGAGGCCGCCGGTGGCTCTTGGTT
CCGCTTCGTGCTCACTGGACGCATCACAGGCGGCCGACTTAAAACTCCTG
CGGATGCAGACGCCGAATCGATTCAGGCGAGATGGGTGCGTAATCCCAAG
GAAGTACCTCTCCGAGCCAACGACATACTCAGTATCATTGAGATTGGAAG
GGCGTATCATCAGGGGCAAAAGATTGCCATTAGCCCTTCACCCTGGCATG
GGACCATACTGCCCACACGTTTCGCCCACAAACGTAACTATCTGCGGGTT
CTGGCTGTAGCCAGAAAGCGAGCACACAACTCGCTGAACATCCTGGTCAG
TGAAAAGAACGCCCACCACTTTCCCACGGTCGAACTGCATCCGAATCGCA
GCCTGCACTCTACGCTGCGCAAGTTCATGATTGAGATTTTTGGTGCGGAG
CTGCCACAGCATCGACCACATGGCTTACTTAGCGTGGAGCACTCAGCTTC
GGAGCAGGAGAACACTGATGGAATATGCCTTAATCTGCTGGTGGCTTTCC
GACCGCCACTGGAGGAAATCTCGCTGATCGGCAAGTGCATTTGGCAGGAA
CTGGGTGCGCCACTTGACGAGATGCTGGGACGTATCGTCAGCAGCAAGAA
CGCATCCATTCCGCTGATGTGGTGCGCGCAGCCTTTCTAGACATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCTAATCAATCTAAACTAATCTGATCC
CAACTAGCCTAAGGAATCTGCCTGACTAGGCTGAATCCCACAATAA
UFO02803.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10898-RA | 1969 | CG10898-RA | 599..1618 | 9..1027 | 5075 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11558756..11559526 | 258..1027 | 3805 | 99.9 | Plus |
| 3R | 32079331 | 3R | 11558435..11558685 | 9..259 | 1255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:09 has no hits.
UFO02803.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:26 Download gff for
UFO02803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10898-RA | 642..1665 | 1..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:40 Download gff for
UFO02803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10898-RA | 642..1665 | 1..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:37 Download gff for
UFO02803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10898-RA | 595..1618 | 1..1027 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:37 Download gff for
UFO02803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11558431..11558684 | 1..258 | 98 | -> | Plus |
| 3R | 11558757..11559526 | 259..1027 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:40 Download gff for
UFO02803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7384153..7384406 | 1..258 | 98 | -> | Plus |
| arm_3R | 7384479..7385248 | 259..1027 | 99 | | Plus |
