Clone UFO02804 Report

Search the DGRC for UFO02804

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:28
Well:4
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCht2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO02804.5prime Sequence

1064 bp (950 high quality bases) assembled on 2009-02-18

> UFO02804.5prime
CAGTCGACATGACGCTGAGGAGCAGACTTAGTGGGGAAGCACCGCAGCTG
TGGCTGCTCCTCCTCCTGGCCTCCACTGCGAGCAGCTTGTGGGCTTCGGT
GGCCGCCAGGACAGGACCCCTGCACGACAAGGTGGTGGTTTGCTACGTTT
CCACATGGGCTGTTTACCGGCCGGAGCAGGGTGCCTATGCCATCGAGAAC
TTCGACCCCAATTTGTGCACCCATGTGGTGTACGCCTTTGCCGGCCTGGA
CATCACCCAGGCAGCCATAAAGTCGTTGGATCCCTGGCAGGACCTAAAGG
AGGAGTACGGCAAGGGTGGCTACGAGAAAATGACGGGTCTGAAGCGCAGC
CATCCGCATCTGAAGGTCAGCCTGGCCATCGGCGGCTGGAACGAGGGATC
GGCCAACTACTCCACCCTGGTGGCCAACAATCTGCTGCGCGGCAGGTTCG
TCAAGCAGGTGTCCAGTTTCATACGCAAGTACAACTTCGACGGGCTGGAT
CTCGACTGGGAGTATCCCACGCAGCGGAAGGGCAAGCCCGCGGATCGCGA
GAACTTCGTTCTGCTGACCAAGGAGCTGCGCGAGGAGTTCGACGAGCACG
GCCTGCTGCTGACCTCCGCCATCGGAGCCTCCAAGAAGGTGATCGACGAG
GCCTATGACGTGCGGCAGATCTCGCGTTACTTGGACTACCTGCACATCAT
GTGCTACGACTACCACGGCAGCTGGGACCGCCGAGTTGGTTACAATGCTC
CGCTCACGGCGCCCGCGGATGATCCGCTGAGTGTGAAATTCTCCATTGAC
TACCTGCTGAAACTGGGCGCCCCGCCGGAAAAGCTGGTGATGGGCCTGCC
CTTCTACGGACGCACCTCCAGACGTTGGGCAGTGGATTCCTGAACGAAGT
CAGCGACGGCGAAGGCTTCTAAGGACCCTAAACGCGCGAGGACGGGTTCC
CTGGCTACACCAGAATCTGCCAGACACCGGCTACCACACCTCCGGATGAA
AACGAATGGGTACCACAACAGCCAGATGTCTGGCAAGTCTCACGAAAAGC
CTTCACCCCGGAGA

UFO02804.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
Cht2-RB 2690 CG2054-RB 931..1993 9..1064 4610 96.2 Plus
Cht2-RC 1911 CG2054-RC 367..1429 9..1064 4610 96.2 Plus
Cht2-RA 1645 CG2054-RA 101..1163 9..1064 4610 96.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1753438..1753944 785..279 2535 100 Minus
3L 28110227 3L 1754001..1754168 279..112 825 99.4 Minus
3L 28110227 3L 1753096..1753311 998..785 680 89.8 Minus
3L 28110227 3L 1754236..1754342 115..9 535 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:29:24 has no hits.

UFO02804.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:25 Download gff for UFO02804.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 90..1087 1..998 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:53 Download gff for UFO02804.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 95..1092 1..998 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:06 Download gff for UFO02804.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 95..1092 1..998 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:06 Download gff for UFO02804.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1753438..1753943 280..785 100 <- Minus
3L 1754001..1754165 115..279 99 <- Minus
3L 1754237..1754348 1..114 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:53 Download gff for UFO02804.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1753438..1753943 280..785 100 <- Minus
arm_3L 1754001..1754165 115..279 99 <- Minus
arm_3L 1754237..1754348 1..114 96   Minus