UFO02804.5prime Sequence
1064 bp (950 high quality bases) assembled on 2009-02-18
> UFO02804.5prime
CAGTCGACATGACGCTGAGGAGCAGACTTAGTGGGGAAGCACCGCAGCTG
TGGCTGCTCCTCCTCCTGGCCTCCACTGCGAGCAGCTTGTGGGCTTCGGT
GGCCGCCAGGACAGGACCCCTGCACGACAAGGTGGTGGTTTGCTACGTTT
CCACATGGGCTGTTTACCGGCCGGAGCAGGGTGCCTATGCCATCGAGAAC
TTCGACCCCAATTTGTGCACCCATGTGGTGTACGCCTTTGCCGGCCTGGA
CATCACCCAGGCAGCCATAAAGTCGTTGGATCCCTGGCAGGACCTAAAGG
AGGAGTACGGCAAGGGTGGCTACGAGAAAATGACGGGTCTGAAGCGCAGC
CATCCGCATCTGAAGGTCAGCCTGGCCATCGGCGGCTGGAACGAGGGATC
GGCCAACTACTCCACCCTGGTGGCCAACAATCTGCTGCGCGGCAGGTTCG
TCAAGCAGGTGTCCAGTTTCATACGCAAGTACAACTTCGACGGGCTGGAT
CTCGACTGGGAGTATCCCACGCAGCGGAAGGGCAAGCCCGCGGATCGCGA
GAACTTCGTTCTGCTGACCAAGGAGCTGCGCGAGGAGTTCGACGAGCACG
GCCTGCTGCTGACCTCCGCCATCGGAGCCTCCAAGAAGGTGATCGACGAG
GCCTATGACGTGCGGCAGATCTCGCGTTACTTGGACTACCTGCACATCAT
GTGCTACGACTACCACGGCAGCTGGGACCGCCGAGTTGGTTACAATGCTC
CGCTCACGGCGCCCGCGGATGATCCGCTGAGTGTGAAATTCTCCATTGAC
TACCTGCTGAAACTGGGCGCCCCGCCGGAAAAGCTGGTGATGGGCCTGCC
CTTCTACGGACGCACCTCCAGACGTTGGGCAGTGGATTCCTGAACGAAGT
CAGCGACGGCGAAGGCTTCTAAGGACCCTAAACGCGCGAGGACGGGTTCC
CTGGCTACACCAGAATCTGCCAGACACCGGCTACCACACCTCCGGATGAA
AACGAATGGGTACCACAACAGCCAGATGTCTGGCAAGTCTCACGAAAAGC
CTTCACCCCGGAGA
UFO02804.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht2-RB | 2690 | CG2054-RB | 931..1993 | 9..1064 | 4610 | 96.2 | Plus |
Cht2-RC | 1911 | CG2054-RC | 367..1429 | 9..1064 | 4610 | 96.2 | Plus |
Cht2-RA | 1645 | CG2054-RA | 101..1163 | 9..1064 | 4610 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1753438..1753944 | 785..279 | 2535 | 100 | Minus |
3L | 28110227 | 3L | 1754001..1754168 | 279..112 | 825 | 99.4 | Minus |
3L | 28110227 | 3L | 1753096..1753311 | 998..785 | 680 | 89.8 | Minus |
3L | 28110227 | 3L | 1754236..1754342 | 115..9 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:24 has no hits.
UFO02804.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:25 Download gff for
UFO02804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 90..1087 | 1..998 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:53 Download gff for
UFO02804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 95..1092 | 1..998 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:06 Download gff for
UFO02804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 95..1092 | 1..998 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:06 Download gff for
UFO02804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1753438..1753943 | 280..785 | 100 | <- | Minus |
3L | 1754001..1754165 | 115..279 | 99 | <- | Minus |
3L | 1754237..1754348 | 1..114 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:53 Download gff for
UFO02804.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1753438..1753943 | 280..785 | 100 | <- | Minus |
arm_3L | 1754001..1754165 | 115..279 | 99 | <- | Minus |
arm_3L | 1754237..1754348 | 1..114 | 96 | | Minus |