UFO02811.5prime Sequence
1052 bp (1006 high quality bases) assembled on 2009-02-18
> UFO02811.5prime
CAGTCGACATGTCGGACTTTGAAATGGAGGACAGTGCCTCGGGCTACGAC
TCAGGGGATAACTCAGATGCCGAGCTGCAAGCGGCATTTGAGCGAGGCGA
CTTGAAACCAGGCCTAAATGTGGAATTCAATGGCCAGAGAGACAAAGTGA
ACGATGTGACCAAACTGCTGGCCAAGACAGAGGCTATCAAGATGCAACTG
CCTTGGCTGGAACGCCTGGACATGATCAACACACTAGCTCCACTGGCGCC
GGAACTCGCTGTACAGCTGGAGAAGCACGAGCAGAAGCGGGCCAATCTCT
TCAAGGGCAACGCCAAGCTGCCCTACATTCGGCCCGAGGAGGATCCCGTC
CTGAATGACTTCAAGAGGGAGATGCTCTTCCACCGACAGGCGCAAAGTGC
TGTTCTGGAGGCCATTCCCCGCCTTCACGAGCTGGGCATAAAGACTCGTC
GACCCGATGACTACTTCGCTGAAATGGCCAAGTCCGACGAGCACATGCAG
AAGGTGCGCGCCAACCTGATGGCCAAACAGCAAGGACAGGCGAAATCCGA
GCGCATCAAGCAGATCCGCGAGCAGCGCAAGATGGGCAAGATGCTGGCCA
AACAGACCAAGGTCCAACGCGAAGCCGAGAAGAAGGACATGCTGGACAAA
CTGAAGAAGTTCCGCAAGGGCAAGCTGAAAAACCTGGACTTCCTGGAGGA
CGCCAAGGCGCTTGAGTCCAAGCAGAAGCAGTCAGCCGAGAATCGCAAGA
AGCGCAACAAGAAGTTCGGCTTCGGCGGCAAGAAGAAGGGCCTCAAGAGG
AACACAAAGTCCTCCTCCGCGGGATTGGATGGCGACAAGTCCTCCAGGCG
CCAGCGGGGCGTAAAGGCAGTGCTTCGGTCAACAAGCGGCTTGCAAATCG
CGACGCATTAGGCCAAGGCAGAAGGCAAGCTTTCTAGACCATTCGTTTGC
CGCGCGGCCCAAGTTAGTGTCATAATCATATCATAATCATAATCATATTC
CCAACTAGCTTAGGAAGATCCTGTCATGAACTGTTGCTTGGAATTCCTAC
CC
UFO02811.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1542-RA | 1207 | CG1542-RA | 84..1005 | 6..923 | 4510 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31213813..31214567 | 158..910 | 3675 | 99.7 | Plus |
| 3R | 32079331 | 3R | 31213670..31213755 | 73..158 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 31213541..31213609 | 6..74 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:44:34 has no hits.
UFO02811.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:29 Download gff for
UFO02811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1542-RA | 126..1058 | 1..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:11 Download gff for
UFO02811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1542-RA | 78..1010 | 1..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:29 Download gff for
UFO02811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1542-RA | 78..1010 | 1..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:29 Download gff for
UFO02811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31213535..31213609 | 1..74 | 96 | -> | Plus |
| 3R | 31213672..31213755 | 75..158 | 100 | -> | Plus |
| 3R | 31213814..31214583 | 159..923 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:11 Download gff for
UFO02811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27039257..27039331 | 1..74 | 96 | -> | Plus |
| arm_3R | 27039394..27039477 | 75..158 | 100 | -> | Plus |
| arm_3R | 27039536..27040305 | 159..923 | 99 | -> | Plus |
