UFO02813.5prime Sequence
1139 bp (1057 high quality bases) assembled on 2009-02-18
> UFO02813.5prime
CAGTCGACATGGCAACAGTGGTCTTTCTGTCGCGCCAGCGATTGCTTGCC
TGCTCCTTGCGGCTGTTCGGTGGCGCCCACTCAAGGTGCCTGTCGACGAT
GTCCGAGACTAGTCCAACAAGTCTGGCTAGTGATTCCTGGCCTCTCGCGA
ATCGCCGTAACCTGCTCCTGCCCACCGTCAACATCCGCTTCAACCACAAG
TCGGCGAACCCGGCGGCGGCTGCACCAGCGCCCGCCATTAACAACTCGTC
AGCCGGCGGCAAGGATTTGAAGGCCACCAACAGCACCACCTCCAGCGAAC
TCTTTGGCGAGGCGGCAAACATGGGTTTGTTCGCCAAGTTCAAGCACATG
TACAAACAGTACTGGTACGTGCTCATCCCGGTGCACGTGCTCACGTCAGT
GGGCTGGTTTGGAGGCTTCTACTACCTGTCAAAGAGTGGCGTCGATGTGC
CCGCTTTGCTGCAGTACATCCACTTGAGCGAGAACATCATTGAGAAGGTG
CAGGGCTCGGATATGGGGCACTACGCCATCGCCTATCTGTGCTATAAAGT
GGCCACGCCCCTGCGCTACGCCCTTACTTTGGGGTGTACAACCGTATCCA
TTAAGTACCTGGTGCAACACGGCTACATTAAGCCCATGCCCACAAAAAGC
GAGCTAATAAAGATGTACGAGGACAAGAAGGCCACCCGGGCAAGCGCTAA
GGCGGACAAGGCAGAGAAGGACGAGAGAGAAGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAGCATTCTGCCGACAAGGAGCCATCACCAACGCATGATGAAC
CTGAATCGCCCAGCGCATCAGCCACCTTGTTGCTTGCCGTAAATATTTGC
CATGGGTGAACCGGGCGAGAAAAGTTTCAATTGGCCGTA
UFO02813.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14613-RB | 1755 | CG14613-RB | 246..968 | 9..731 | 3615 | 100 | Plus |
| CG14613-RA | 1539 | CG14613-RA | 246..968 | 9..731 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22471349..22471776 | 436..9 | 2140 | 100 | Minus |
| X | 23542271 | X | 22470830..22470979 | 731..582 | 750 | 100 | Minus |
| X | 23542271 | X | 22471141..22471289 | 583..435 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:10:54 has no hits.
UFO02813.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:20 Download gff for
UFO02813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14613-RA | 194..922 | 4..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:39 Download gff for
UFO02813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14613-RA | 240..968 | 4..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:18 Download gff for
UFO02813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14613-RA | 240..968 | 4..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:18 Download gff for
UFO02813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22470830..22470978 | 583..731 | 100 | <- | Minus |
| X | 22471142..22471287 | 437..582 | 100 | <- | Minus |
| X | 22471349..22471782 | 4..436 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:39 Download gff for
UFO02813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21872978..21873123 | 437..582 | 100 | <- | Minus |
| arm_X | 21872666..21872814 | 583..731 | 100 | <- | Minus |
| arm_X | 21873185..21873618 | 4..436 | 99 | | Minus |
