UFO02815.5prime Sequence
1169 bp (1023 high quality bases) assembled on 2009-02-18
> UFO02815.5prime
CAGTCGACATGACCGCCGTGTTCCGCGTAGGACTGGTGCGGCTCGTCAGC
CGCGCCACACAGTCGCCCAATCTACTCCAGGCGCAGACGAATGCCCTGCC
TGCTGCCTTCCAGCAGCGATGCAGCATCTCCGGCAAGACGATGCGAGGTG
GACCACGGGTGCCCAAGGCCGCCCCCTATCCGTACAAGACGAAGAAGTAC
AGCGTGTTCAATGCTATTTTCGACAAGACCTCCAAGCGTTTTGACGAGAA
CTCCAAGGTGATCTGTGTGGAGGGACCCATCGCGGCCGGCAAGTCAAAGT
TCGCCAAGGAACTGGCTGAGGAGCTGGACATGGAGTACTATCCGGCAGTT
GATCTGGACCTAATCTACATCAATTCGTACGGCTATGACATGAGGAAGTT
GGATCCTCAGTTGCCGCCCAGCTGCCGAAGCTACGATGTGCGCAACTTCT
GCCTGGATCCCAGCCACGATCTGGCTGCCCAGTTCCAGATTCGCATGTAC
ATGCTGCGCTATTCGCAGTACATTGATGCCCTGCAGCACGTCCTTAGCAC
CGGCCAGGGTGTTGTCCTCGAGCGCAGCCCCTACTCGGACTTTGTCTTCA
TGGAGGCCATGTTTCGGCAGGGTTATCTGTCACGCGGTGCGCGTTCCGTG
TATAATGAGCTCCGACAGAACACCATCGGGGAGCTGCTGAAGCCGCATTT
GGTTATCTACTTGGATCTGCCGGTCGATGCCGTGAAGAAGCAGATCAAGG
CACGCAATGTGGACTACGAGGTGCAGTCAAAGGTGTTCAGCGATGCCTAC
TTGAGCGATTTGGAGCAGCTGTACAAGCAGCAGTACCTCAAGGACATCTC
CACCCATGCCGAGCTGCTCATCTACGACTGGACAGCCGGCGGTGAGACTG
AGTTGTGGTGGAGGATATCGAACGCATCGACTTCAACCAGTTTGAGGCCG
ATATTCACACAAGAAGATGCTCGACTGGCGTTTCCCGCTGGAGGCCGAGT
GTGCGAAGCCCGTATCAAGTACTGCCATGAAAAGCCCGATCTGATGAATT
CTCAATGTGGCCCGCGTTTCCATGTCCCGAGCTGGTGCCACGCCTGACAA
CGGCAAGTCTGGCCGTGAAGTCTGGTCAATGCTCCGGCCATGATACCGTC
CTGCCTCAATGCAAACATG
UFO02815.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND42-RC | 1423 | CG6343-RC | 118..1287 | 9..1169 | 5345 | 97.9 | Plus |
| ND42-RB | 1618 | CG6343-RB | 313..1482 | 9..1169 | 5345 | 97.9 | Plus |
| ND42-RA | 1379 | CG6343-RA | 74..1243 | 9..1169 | 5345 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22028021..22029065 | 9..1050 | 5060 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:54 has no hits.
UFO02815.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:56 Download gff for
UFO02815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-RB | 228..1330 | 1..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:02 Download gff for
UFO02815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-RA | 74..1168 | 9..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:32 Download gff for
UFO02815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-RA | 74..1168 | 9..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:32 Download gff for
UFO02815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22028013..22029104 | 1..1088 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:02 Download gff for
UFO02815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17853735..17854826 | 1..1088 | 98 | -> | Plus |
