UFO02816.5prime Sequence
1161 bp (1030 high quality bases) assembled on 2009-02-18
> UFO02816.5prime
CAGTCGACATGGTTAGGTCAGCTCTCGTTGTTGCAGCCATCGCACTTTCC
GTACTTATTGCACTGCAGGGCGTGGATGCCGACAAAAAGCAGAGCAAGAA
GTACAGCAAGGAGGCCAACGACCCGCATTTTCAGCAAGTAAAGCAGGAGA
AGTATGATCCGGATTTTAAGAGCATCCAGCGGCCATTTCGCATGGCCAAG
TTGAATCTCGTGTGGGCCAAGGCGCAGAATCGCTTAACAGAGCCCAAGCT
CAAGTCACTGTACATGGAACTCAAGATCCACGATAAGGAGGAGATCGCTT
GGAAGCAGCTCAACTCGCAGCACAAGGACAAAGACGGGCTGAAGGCCGAC
GAACTGCGCCGCAAGCTCATTGGCATCATGAGCAGCTACGATCTGCTAGA
GCATTTTGACGACACTCAGGATACGGAGAAGCTTAAGCCCTACAAGAAAT
TCCACGACGCCGAGGAGCGACACAGAAACAAGAGTCTTTTCAAGGACAAG
AAACTCAACCGACTTTGGGAGAAGGCCGAGATTTCCGGATTTACTGCAGA
GGAATTGAAATCCTTGAAACAGGAGTTTGACCATCACCAGGATAAAGTGG
ATGTGTACTACAGCTTGCTGGAAAACATTGGCACCGTAGACACCGACAAG
CATGAAAATGCTATTAACACGGAAGACTTGGACACCTACAATCTGATTTC
GAATGATGTCAATGAGAACGACATCAAAACCCATGCGCAAAACGTGAAGA
GTTTCGAGAACGACCTTAACACTCTGCGAGGACATCACACGGGCATCAAG
GATCACTACGATAGGCTGGAACGCCTGGTGTCCTCCGGTCCACACAGTCA
GACTTCATTGAACCCAAGTCCAGGGTCTATGGCGAGTGGCCCAGGCTAGC
AATTTTACGGTTAAAGAACTGGAGTCCATTAAAACCGAATTGCATCACTT
CGAAAGTCGCCTATTAAAGCTGCGTCACTTGCATGCCGAGCATGCTTTGC
AAAAGGAGAAATACCAGGCGAAAAGTGAAGGACCAAAAGCAGCCGCTTTG
AGGAAATGAGAACAGCCTGAAGAAGCAAACTCGCCAAGGTGGAAAGCCTC
CAGGAAAACATTGATTAAAATACATCTCAGCACCGAGCCTTGCAGCATCT
TAACATTCGTT
UFO02816.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8507-RA | 1384 | CG8507-RA | 88..1196 | 9..1114 | 5230 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9792396..9792758 | 658..1018 | 1700 | 99.2 | Plus |
| 3R | 32079331 | 3R | 9791570..9791791 | 9..230 | 1110 | 100 | Plus |
| 3R | 32079331 | 3R | 9791846..9792061 | 231..446 | 1080 | 100 | Plus |
| 3R | 32079331 | 3R | 9792121..9792334 | 444..657 | 1070 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:49:54 has no hits.
UFO02816.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:55 Download gff for
UFO02816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8507-RA | 95..1213 | 2..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:55 Download gff for
UFO02816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8507-RA | 82..1200 | 2..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:03 Download gff for
UFO02816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8507-RA | 82..1200 | 2..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:03 Download gff for
UFO02816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9792124..9792334 | 447..657 | 100 | -> | Plus |
| 3R | 9792396..9792757 | 658..1016 | 98 | -> | Plus |
| 3R | 9791564..9791791 | 2..230 | 98 | -> | Plus |
| 3R | 9791846..9792061 | 231..446 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:55 Download gff for
UFO02816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5617286..5617513 | 2..230 | 98 | -> | Plus |
| arm_3R | 5617568..5617783 | 231..446 | 100 | -> | Plus |
| arm_3R | 5617846..5618056 | 447..657 | 100 | -> | Plus |
| arm_3R | 5618118..5618479 | 658..1016 | 98 | -> | Plus |
