UFO02817.5prime Sequence
1135 bp (989 high quality bases) assembled on 2009-02-18
> UFO02817.5prime
CAGTCGACATGAAATCAGATAACTACCGTCTCATACAGGAGGTGTCCAAG
CGGCGGTGCCTGTGGGACACAAACATGTCCATTTCGTACCGCAACCAGGA
CGCAGCTCTCCAGTGGGCGAGTGTCGCGCAGATAATGCAGCAGGATGTCT
CGATCTGCAAGAAACGTTTCAAGGGAATGCGGGACAGCTACCGGGCAGAG
GTGCGCAAGATACAGCAGAAACGAATCGAGATGTCCCACTGGCCATACTT
TCGCTCACTGGAGTTCATGCGCCAAATCTTCGATCCGGAGGGCCTGGTGC
CCTTTCCACCAGAGCCCTTCGTGATGAACACCGAGCAGCCGGAAGTCTTC
GAGCCCACCCGACTGGTTGACTTCGCTATCGATTTGGATTTGGACAATGA
TGACTCTGTTGACTTTGAAATCATCGAGGACATATTTAAGCGGGAGCCGT
CAGTGCCCCAGGACTCTGGCTCGGATAAAGGCTCGCTGATCAAGCCTTTG
GATTCTTCATCCTCGGGCGCCCATCGTTCCGATCAGGATCTATCGCCCAC
ATTGCCCATACACTTGCCGCGCCACCAACAATTCCTGCCACGTCCACCCC
CGCCTTCGAAGAGAGGACGTCGGAGGAAAACTTCGCCGTCTAACGATGTC
CCCTTATTGAATGGATACGCCAGCCAGGCGTCAAAGTCTACCACTGAACC
CGATCTAAGAACGATTCGGACTTGAGTTTCTTGATGAGCATGATGCCGCA
CGTAAAGTCTCTGTCAGCCATTAGCAATCTTAAAGTTTTCGAATGGAGAT
GGCGCGCGTTCTGGTGGAACTCAGGGAGGAGGATCAGCACATGCTCGCGG
CGGCGGGACCCGAAGACGTTCTAGAGCGCAGCATGCCCAAACTAACACCA
GCCCCGATTTCAGGTTTTGCACTCAGCTGGAGAAATCCCAGTACCATCTA
TCCATTCCAAGCTACCAAATCAGTAACCGAAAAACACCACCTTCGTTTGA
CTATGTCCACAGCCTCCTTGTTGAAGTGCGATTCAGTAAAAAATGAGCTT
CTGCTGCAAGCTTTTCATGACCATTCGTTGGGCGCCGGGGTCCAGGTAGA
GTGGTCATAGCTTTATCATACTATAATCCCTAATC
UFO02817.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-RB | 1907 | CG11723-RB | 251..1300 | 8..1055 | 4825 | 97.9 | Plus |
| CG11723-RA | 1707 | CG11723-RA | 251..1300 | 8..1055 | 4825 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2145948..2146814 | 1013..147 | 4030 | 98.4 | Minus |
| 2L | 23513712 | 2L | 2146886..2147025 | 147..8 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:01 has no hits.
UFO02817.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:58:54 Download gff for
UFO02817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 255..1286 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:18 Download gff for
UFO02817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 243..1274 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:34 Download gff for
UFO02817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 243..1274 | 1..1032 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:34 Download gff for
UFO02817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2145932..2146813 | 148..1030 | 98 | <- | Minus |
| 2L | 2146886..2147031 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:18 Download gff for
UFO02817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2145932..2146813 | 148..1030 | 98 | <- | Minus |
| arm_2L | 2146886..2147031 | 1..147 | 97 | | Minus |
